Variant report

Variant	rs73041656
Chromosome Location	chr2:189070772-189070773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10221554	0.92[ASN][1000 genomes]
rs11676580	0.87[ASN][1000 genomes]
rs12614592	0.89[ASN][1000 genomes]
rs13389609	0.92[ASN][1000 genomes]
rs13403138	0.92[ASN][1000 genomes]
rs13416775	0.92[ASN][1000 genomes]
rs13432874	0.92[ASN][1000 genomes]
rs16829913	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16829916	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34477786	0.92[ASN][1000 genomes]
rs4337443	0.91[ASN][1000 genomes]
rs4371324	0.92[ASN][1000 genomes]
rs4372844	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4490147	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4536617	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4541223	0.92[ASN][1000 genomes]
rs4552156	0.87[ASN][1000 genomes]
rs4595930	0.92[ASN][1000 genomes]
rs60688387	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66579041	0.92[ASN][1000 genomes]
rs66725342	0.92[ASN][1000 genomes]
rs6707721	0.92[ASN][1000 genomes]
rs6708455	0.87[ASN][1000 genomes]
rs67324207	0.92[ASN][1000 genomes]
rs6735839	0.81[ASN][1000 genomes]
rs6749420	0.81[ASN][1000 genomes]
rs6749586	0.92[ASN][1000 genomes]
rs68056256	0.92[ASN][1000 genomes]
rs72901564	0.92[ASN][1000 genomes]
rs72901581	0.92[ASN][1000 genomes]
rs72903517	0.87[ASN][1000 genomes]
rs72903530	0.81[ASN][1000 genomes]
rs73039927	0.92[ASN][1000 genomes]
rs73039929	0.92[ASN][1000 genomes]
rs73043732	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7586536	0.92[ASN][1000 genomes]
rs7596399	0.92[ASN][1000 genomes]
rs7601023	0.92[ASN][1000 genomes]
rs9653312	0.92[ASN][1000 genomes]
rs980065	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv875605	chr2:189017499-189080087	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189069400-189070800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links