Variant report

Variant	rs73042935
Chromosome Location	chr6:165112642-165112643
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:165110029..165112755-chr6:165114733..165117071,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73042930	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1017076	chr6:164945167-165195092	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830861	chr6:165014475-165231204	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv525815	chr6:165017873-165262895	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv605234	chr6:165054409-165130872	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165108600-165113800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:165111200-165112800	Enhancers	Brain Substantia Nigra	brain
3	chr6:165111200-165113400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:165111200-165117600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:165111400-165115000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:165111800-165114800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:165111800-165114800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:165112000-165114800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:165112200-165112800	Enhancers	Brain Cingulate Gyrus	brain
10	chr6:165112200-165112800	Enhancers	Brain Hippocampus Middle	brain
11	chr6:165112200-165114000	Weak transcription	Brain Angular Gyrus	brain
12	chr6:165112200-165114800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:165112200-165114800	Weak transcription	Fetal Brain Male	brain
14	chr6:165112200-165115000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:165112200-165115000	Weak transcription	Fetal Brain Female	brain
16	chr6:165112200-165117200	Enhancers	Brain Germinal Matrix	brain
17	chr6:165112600-165113400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:165112600-165113800	Weak transcription	Brain Anterior Caudate	brain
19	chr6:165112600-165113800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:165112600-165115400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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