Variant report

Variant	rs73043772
Chromosome Location	chr3:24415028-24415029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24413068..24415725-chr3:24426209..24428030,2	K562	blood:
2	chr3:24412895..24415417-chr3:24537290..24539640,2	K562	blood:
3	chr3:24414427..24416637-chr3:24418251..24421032,2	MCF-7	breast:
4	chr3:24412210..24416414-chr3:24416681..24419144,4	MCF-7	breast:
5	chr3:24413191..24415623-chr3:24419821..24421904,2	K562	blood:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11919155	0.96[EUR][1000 genomes]
rs73043774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24360400-24418000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:24394000-24431400	Weak transcription	Gastric	stomach
3	chr3:24407400-24418400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:24409200-24416400	Weak transcription	A549	lung
5	chr3:24412200-24417600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:24412200-24417800	Weak transcription	Left Ventricle	heart
7	chr3:24412400-24421000	Weak transcription	Right Atrium	heart
8	chr3:24412400-24428400	Weak transcription	NHDF-Ad	bronchial
9	chr3:24413400-24420200	Enhancers	Fetal Intestine Large	intestine
10	chr3:24413800-24415600	Enhancers	K562	blood
11	chr3:24414000-24418200	Enhancers	Fetal Intestine Small	intestine
12	chr3:24414200-24415200	Flanking Active TSS	HepG2	liver
13	chr3:24414200-24415400	Enhancers	Psoas Muscle	Psoas
14	chr3:24414200-24415600	Enhancers	Colon Smooth Muscle	Colon
15	chr3:24414200-24415800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr3:24414200-24423000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr3:24414400-24415400	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr3:24414400-24415600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr3:24414400-24418200	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr3:24414600-24415400	Enhancers	Stomach Smooth Muscle	stomach
21	chr3:24414600-24415600	Enhancers	Fetal Heart	heart
22	chr3:24414600-24416600	Enhancers	Fetal Kidney	kidney
23	chr3:24414800-24415200	Enhancers	Lung	lung
24	chr3:24414800-24415200	Enhancers	Stomach Mucosa	stomach
25	chr3:24414800-24415200	Enhancers	HMEC	breast
26	chr3:24414800-24415400	Enhancers	Pancreas	Pancrea
27	chr3:24414800-24415600	Enhancers	Liver	Liver
28	chr3:24414800-24416400	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr3:24414800-24418000	Enhancers	Rectal Smooth Muscle	rectum
30	chr3:24415000-24415200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:24415000-24417600	Weak transcription	Fetal Lung	lung
32	chr3:24415000-24417600	Weak transcription	Small Intestine	intestine
33	chr3:24415000-24418600	Weak transcription	Aorta	Aorta

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