Variant report

Variant	rs73044321
Chromosome Location	chr2:187436202-187436203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:187435611..187437376-chr2:187439116..187441984,2	MCF-7	breast:
2	chr2:187435550..187437375-chr2:187442844..187445371,2	K562	blood:
3	chr2:187406154..187410015-chr2:187435632..187441776,6	MCF-7	breast:
4	chr2:187411689..187413817-chr2:187434858..187437606,2	MCF-7	breast:
5	chr2:187433203..187436265-chr2:187453472..187457114,4	K562	blood:

Variant related genes	Relation type
ENSG00000138448	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs61762257	1.00[AMR][1000 genomes]
rs61763064	1.00[AMR][1000 genomes]
rs61763658	1.00[AMR][1000 genomes]
rs6710584	1.00[AMR][1000 genomes]
rs73040060	1.00[AMR][1000 genomes]
rs73044311	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044313	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73050263	1.00[AMR][1000 genomes]
rs73050264	1.00[AMR][1000 genomes]
rs73050269	1.00[AMR][1000 genomes]
rs73050271	1.00[AMR][1000 genomes]
rs73050277	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757844	chr2:187332780-187580547	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759107	chr2:187332780-187580547	Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv459988	chr2:187364878-187440683	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv584031	chr2:187364878-187440683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1004309	chr2:187389880-187455946	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv536082	chr2:187389880-187455946	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv875552	chr2:187393729-187505486	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1014203	chr2:187413781-187477586	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv536083	chr2:187413781-187477586	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	esv2756507	chr2:187416494-187470494	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	esv2756956	chr2:187416599-187492742	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
12	nsv818105	chr2:187423298-187481835	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
13	esv2753217	chr2:187424494-187470494	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
14	esv1007920	chr2:187427312-187437824	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187426600-187441200	Weak transcription	Aorta	Aorta
2	chr2:187434600-187436400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:187434600-187436400	Enhancers	Hela-S3	cervix
4	chr2:187434600-187436800	Enhancers	Stomach Mucosa	stomach
5	chr2:187434800-187438200	Enhancers	NHEK	skin
6	chr2:187435200-187439800	Weak transcription	HSMMtube	muscle
7	chr2:187435400-187438200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:187435400-187439400	Weak transcription	Fetal Intestine Small	intestine
9	chr2:187435400-187439600	Weak transcription	HSMM	muscle
10	chr2:187435600-187437600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:187435600-187439800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:187435600-187441400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:187435600-187453800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:187435800-187437400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:187435800-187437600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:187435800-187439200	Weak transcription	NH-A	brain
17	chr2:187435800-187439400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:187435800-187439400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:187435800-187439400	Weak transcription	HUVEC	blood vessel
20	chr2:187435800-187439600	Weak transcription	K562	blood
21	chr2:187435800-187439800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr2:187435800-187439800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr2:187435800-187440400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr2:187435800-187440600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:187436000-187437400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr2:187436000-187437400	Weak transcription	HMEC	breast
27	chr2:187436000-187439400	Weak transcription	Osteobl	bone
28	chr2:187436000-187439600	Weak transcription	HepG2	liver
29	chr2:187436000-187439800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr2:187436000-187439800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr2:187436200-187436800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:187436200-187437400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:187436200-187437400	Enhancers	A549	lung
34	chr2:187436200-187437600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links