Variant report

Variant	rs73047669
Chromosome Location	chr1:180599560-180599561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr1:180599245-180599679	PFSK-1	brain:	n/a	n/a
2	REST	chr1:180599301-180599636	PFSK-1	brain:	n/a	n/a
3	REST	chr1:180599321-180599600	SK-N-SH	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:180486117..180489431-chr1:180599413..180603700,5	MCF-7	breast:
2	chr1:180489178..180492158-chr1:180598991..180600573,2	K562	blood:
3	chr1:180470531..180473320-chr1:180599332..180602016,2	K562	blood:
4	chr1:180470493..180473506-chr1:180597830..180602116,4	MCF-7	breast:
5	chr1:180598794..180600928-chr1:181056427..181059135,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
XPR1	TF binding region
ENSG00000135847	Chromatin interaction
ENSG00000162783	Chromatin interaction
ENSG00000206905	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55846815	1.00[EUR][1000 genomes]
rs56150326	1.00[EUR][1000 genomes]
rs56248351	1.00[EUR][1000 genomes]
rs57076921	1.00[EUR][1000 genomes]
rs58167853	1.00[EUR][1000 genomes]
rs58263443	1.00[EUR][1000 genomes]
rs74132998	1.00[EUR][1000 genomes]
rs74133000	1.00[EUR][1000 genomes]
rs74135803	1.00[EUR][1000 genomes]
rs74135814	1.00[EUR][1000 genomes]
rs74135816	1.00[EUR][1000 genomes]
rs74135829	1.00[EUR][1000 genomes]
rs74135835	1.00[EUR][1000 genomes]
rs74135840	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180581800-180600600	Weak transcription	Fetal Heart	heart
2	chr1:180593200-180601000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:180593400-180600200	Weak transcription	K562	blood
4	chr1:180593600-180599600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:180598000-180600400	Weak transcription	Spleen	Spleen
6	chr1:180599000-180600800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:180599200-180600200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:180599200-180600800	Enhancers	Adipose Nuclei	Adipose
9	chr1:180599400-180599600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:180599400-180599600	Enhancers	Right Atrium	heart
11	chr1:180599400-180599800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr1:180599400-180600400	Enhancers	Duodenum Mucosa	Duodenum
13	chr1:180599400-180600600	Enhancers	Left Ventricle	heart
14	chr1:180599400-180600800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:180599400-180600800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:180599400-180600800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:180599400-180601000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:180599400-180601000	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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