Variant report

Variant	rs73047747
Chromosome Location	chr1:180862621-180862622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:180861170..180863279-chr1:180863487..180865268,2	K562	blood:
2	chr1:180857822..180860157-chr1:180861248..180863128,2	MCF-7	breast:
3	chr1:180851999..180855713-chr1:180860478..180863788,4	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10914125	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086559	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088182	1.00[AMR][1000 genomes]
rs12089778	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12092920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12095486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12096475	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58065433	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59562665	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6676373	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691204	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047730	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047732	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047734	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014404	chr1:180770155-181090200	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180805800-180881000	Weak transcription	Aorta	Aorta
2	chr1:180812200-180867000	Weak transcription	Ovary	ovary
3	chr1:180822000-180862800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:180822800-180862800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr1:180824000-180867600	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:180824000-180880800	Weak transcription	Right Ventricle	heart
7	chr1:180828600-180867800	Weak transcription	HSMM	muscle
8	chr1:180830000-180867600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:180835400-180862800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:180835800-180870400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:180841000-180867800	Weak transcription	Lung	lung
12	chr1:180843600-180862800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr1:180844200-180872200	Weak transcription	Esophagus	oesophagus
14	chr1:180844400-180867400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:180845800-180869000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:180847400-180875400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:180849400-180867200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:180851000-180867000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:180851400-180867400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:180851400-180867600	Weak transcription	Fetal Heart	heart
21	chr1:180851600-180864200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr1:180851600-180867600	Weak transcription	Brain Germinal Matrix	brain
23	chr1:180851600-180867800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:180851800-180867400	Weak transcription	Fetal Intestine Small	intestine
25	chr1:180852000-180870400	Weak transcription	A549	lung
26	chr1:180853600-180862800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:180853600-180867200	Weak transcription	Adipose Nuclei	Adipose
28	chr1:180853800-180862800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:180853800-180867800	Weak transcription	Fetal Stomach	stomach
30	chr1:180854000-180866400	Weak transcription	Primary B cells from cord blood	blood
31	chr1:180854400-180866800	Weak transcription	Left Ventricle	heart
32	chr1:180854800-180866800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr1:180855000-180862800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr1:180857000-180862800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr1:180857200-180867400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr1:180857400-180863000	Weak transcription	Primary T cells from cord blood	blood
37	chr1:180857600-180869600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:180858000-180862800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr1:180858400-180870600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr1:180858800-180867400	Weak transcription	Fetal Brain Female	brain
41	chr1:180861200-180880800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr1:180861600-180863600	Enhancers	Right Atrium	heart
43	chr1:180861800-180863600	Enhancers	Fetal Thymus	thymus
44	chr1:180862200-180867400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr1:180862600-180862800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr1:180862600-180863000	Enhancers	HUVEC	blood vessel
47	chr1:180862600-180863400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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