Variant report

Variant	rs7304843
Chromosome Location	chr12:1855910-1855911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:1853793..1856029-chr12:1861433..1863477,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11061904	1.00[EUR][1000 genomes]
rs1860049	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2041059	1.00[EUR][1000 genomes]
rs2108398	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2215094	1.00[TSI][hapmap]
rs2369974	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2370054	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35510932	1.00[EUR][1000 genomes]
rs4384425	0.81[AFR][1000 genomes]
rs4765838	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4766411	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4766420	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs56369812	1.00[EUR][1000 genomes]
rs6489321	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6489325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7133749	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7135229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7136278	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs7297878	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7308757	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7314133	1.00[EUR][1000 genomes]
rs74061311	1.00[EUR][1000 genomes]
rs74061331	1.00[EUR][1000 genomes]
rs74061332	1.00[EUR][1000 genomes]
rs758026	0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs758027	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs758169	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7957003	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7962777	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7964434	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042863	chr12:1163817-1902302	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv541345	chr12:1163817-1902302	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv832304	chr12:1710249-1868642	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv832305	chr12:1769852-1936054	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv948480	chr12:1776217-2284333	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv832306	chr12:1847726-2001308	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:1816200-1857800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:1816200-1866400	Weak transcription	Esophagus	oesophagus
3	chr12:1816200-1897400	Weak transcription	Aorta	Aorta
4	chr12:1817000-1856600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:1823000-1866600	Weak transcription	Gastric	stomach
6	chr12:1824000-1866600	Weak transcription	HSMM	muscle
7	chr12:1826000-1885400	Weak transcription	NH-A	brain
8	chr12:1831400-1857800	Weak transcription	Lung	lung
9	chr12:1837000-1861600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:1845600-1885200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:1847600-1857800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:1847600-1863800	Weak transcription	Ovary	ovary
13	chr12:1847600-1885200	Weak transcription	Right Atrium	heart
14	chr12:1849800-1868400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr12:1849800-1868800	Weak transcription	Pancreas	Pancrea
16	chr12:1849800-1905600	Weak transcription	Small Intestine	intestine
17	chr12:1850000-1856800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr12:1850000-1866600	Weak transcription	Fetal Lung	lung
19	chr12:1850200-1856000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr12:1850200-1856000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr12:1850200-1856600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr12:1850200-1865800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr12:1850200-1885200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr12:1850400-1856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr12:1850400-1863400	Weak transcription	Fetal Stomach	stomach
26	chr12:1850400-1870400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr12:1850400-1904800	Weak transcription	Fetal Kidney	kidney
28	chr12:1850600-1856000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr12:1850800-1863400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr12:1850800-1863400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr12:1850800-1885200	Weak transcription	Right Ventricle	heart
32	chr12:1851000-1856000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr12:1851000-1856200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr12:1851000-1863400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr12:1851000-1866400	Weak transcription	NHLF	lung
36	chr12:1851200-1858000	Weak transcription	Osteobl	bone
37	chr12:1851400-1856400	Weak transcription	Hela-S3	cervix
38	chr12:1851400-1856600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr12:1851400-1857000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr12:1851400-1866600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr12:1851600-1856000	Weak transcription	Primary B cells from cord blood	blood
42	chr12:1851600-1856000	Weak transcription	Primary B cells from peripheral blood	blood
43	chr12:1851600-1856000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr12:1851600-1856200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr12:1851600-1858000	Weak transcription	Psoas Muscle	Psoas
46	chr12:1851600-1863400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr12:1851600-1866400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr12:1851800-1863400	Weak transcription	Thymus	Thymus
49	chr12:1851800-1863600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr12:1851800-1876600	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links