Variant report

Variant	rs73048659
Chromosome Location	chr2:188311651-188311652
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58337504	0.87[AFR][1000 genomes]
rs73048644	0.87[AFR][1000 genomes]
rs73048662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73048664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73048665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73048688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8176446	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8176535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8176542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8176571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv834487	chr2:188182556-188353363	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv875557	chr2:188219052-188370232	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv875558	chr2:188219052-188388311	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv875559	chr2:188219052-188390112	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv875560	chr2:188219052-188508011	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv875561	chr2:188226900-188440752	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv584036	chr2:188256158-188369841	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv875562	chr2:188258904-188370232	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv875563	chr2:188258904-188388311	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv875564	chr2:188258904-188414161	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv875565	chr2:188258904-188440752	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv875566	chr2:188258904-188626214	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
14	nsv875567	chr2:188258904-188673462	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
15	nsv834488	chr2:188268434-188415496	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
16	nsv875568	chr2:188291105-188653806	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
17	nsv1011800	chr2:188301324-188340396	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
18	nsv459989	chr2:188308640-188318187	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv584037	chr2:188308640-188318187	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188299200-188311800	Weak transcription	Left Ventricle	heart
2	chr2:188300200-188312200	Weak transcription	NHLF	lung
3	chr2:188307800-188313200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr2:188308600-188313000	Active TSS	Fetal Muscle Leg	muscle
5	chr2:188309400-188313000	Active TSS	HUVEC	blood vessel
6	chr2:188309800-188312800	Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr2:188310000-188313000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:188310400-188313200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:188310800-188312400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:188310800-188313000	Active TSS	Fetal Kidney	kidney
11	chr2:188310800-188313200	Active TSS	Brain Anterior Caudate	brain
12	chr2:188310800-188313200	Active TSS	Fetal Intestine Large	intestine
13	chr2:188310800-188313200	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr2:188310800-188313200	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr2:188310800-188313400	Active TSS	GM12878-XiMat	blood
16	chr2:188310800-188313600	Active TSS	Right Atrium	heart
17	chr2:188311000-188311800	Enhancers	Primary B cells from cord blood	blood
18	chr2:188311000-188313200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:188311000-188313200	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr2:188311000-188313400	Active TSS	Adipose Nuclei	Adipose
21	chr2:188311000-188313400	Active TSS	Stomach Smooth Muscle	stomach
22	chr2:188311200-188312000	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr2:188311200-188313000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr2:188311200-188313400	Active TSS	Ovary	ovary
25	chr2:188311400-188312400	Weak transcription	Liver	Liver
26	chr2:188311400-188312800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr2:188311400-188313000	Active TSS	Right Ventricle	heart
28	chr2:188311400-188313200	Active TSS	Fetal Muscle Trunk	muscle
29	chr2:188311400-188313200	Active TSS	Fetal Stomach	stomach
30	chr2:188311400-188313400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:188311400-188313400	Active TSS	Psoas Muscle	Psoas
32	chr2:188311600-188311800	Active TSS	Primary monocytes fromperipheralblood	blood
33	chr2:188311600-188311800	Active TSS	Monocytes-CD14+_RO01746	blood
34	chr2:188311600-188312000	Flanking Active TSS	Primary T cells from cord blood	blood
35	chr2:188311600-188312400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr2:188311600-188312800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:188311600-188312800	Active TSS	Fetal Lung	lung
38	chr2:188311600-188313000	Active TSS	Duodenum Mucosa	Duodenum
39	chr2:188311600-188313200	Active TSS	Brain Hippocampus Middle	brain
40	chr2:188311600-188313200	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr2:188311600-188313200	Active TSS	Colon Smooth Muscle	Colon
42	chr2:188311600-188313400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links