Variant report

Variant	rs73052871
Chromosome Location	chr5:17320348-17320349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:17216575..17219248-chr5:17319469..17322289,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000215196	Chromatin interaction
ENSG00000176788	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10074496	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10075136	0.82[ASN][1000 genomes]
rs10462609	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11949223	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11949279	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11950287	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13355635	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869690	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs16869693	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs182441	0.92[EUR][1000 genomes]
rs1827400	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2134241	0.85[EUR][1000 genomes]
rs2134242	0.85[EUR][1000 genomes]
rs2173968	0.85[EUR][1000 genomes]
rs2454946	0.89[EUR][1000 genomes]
rs2650923	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2650935	0.85[EUR][1000 genomes]
rs2650936	0.85[EUR][1000 genomes]
rs2650937	0.82[EUR][1000 genomes]
rs2650938	0.85[EUR][1000 genomes]
rs2650939	0.85[EUR][1000 genomes]
rs2650940	0.82[EUR][1000 genomes]
rs2650942	0.85[EUR][1000 genomes]
rs2650943	0.85[EUR][1000 genomes]
rs2650944	0.85[EUR][1000 genomes]
rs2650945	0.85[EUR][1000 genomes]
rs2652638	0.85[EUR][1000 genomes]
rs2652639	0.85[EUR][1000 genomes]
rs2652640	0.85[EUR][1000 genomes]
rs2652641	0.85[EUR][1000 genomes]
rs2652643	0.85[EUR][1000 genomes]
rs2652644	0.85[EUR][1000 genomes]
rs2652645	0.85[EUR][1000 genomes]
rs2652646	0.85[EUR][1000 genomes]
rs2652647	0.82[EUR][1000 genomes]
rs2652648	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28476505	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28665339	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs298530	0.92[EUR][1000 genomes]
rs298531	0.92[EUR][1000 genomes]
rs298532	0.87[EUR][1000 genomes]
rs298534	0.89[EUR][1000 genomes]
rs298535	0.87[EUR][1000 genomes]
rs298536	0.87[EUR][1000 genomes]
rs298546	0.89[EUR][1000 genomes]
rs298547	0.89[EUR][1000 genomes]
rs298548	0.89[EUR][1000 genomes]
rs298550	0.89[EUR][1000 genomes]
rs298558	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs298559	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs298560	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs298562	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs299384	0.92[EUR][1000 genomes]
rs299385	0.92[EUR][1000 genomes]
rs299386	0.89[EUR][1000 genomes]
rs56663279	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56705013	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58062922	0.83[EUR][1000 genomes]
rs58468495	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6862515	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73052881	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73052887	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73052888	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73052898	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73052901	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73054809	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73054823	0.85[EUR][1000 genomes]
rs7719794	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029959	chr5:17133214-17455995	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv461988	chr5:17296342-17484038	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv597313	chr5:17296342-17484038	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17315000-17320800	Enhancers	Primary B cells from peripheral blood	blood
2	chr5:17318000-17325800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:17318400-17320400	Enhancers	Primary B cells from cord blood	blood
4	chr5:17319800-17321000	Enhancers	A549	lung

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