Variant report

Variant	rs73054269
Chromosome Location	chr1:193643626-193643627
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59177852	1.00[AFR][1000 genomes]
rs73064038	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34989	chr1:193630577-193710196	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2756877	chr1:193631528-193710196	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758986	chr1:193631528-193710196	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193643000-193644200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr1:193643400-193643800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:193643400-193644000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:193643400-193644000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:193643400-193644400	Enhancers	NH-A	brain
6	chr1:193643400-193647400	Enhancers	Hela-S3	cervix
7	chr1:193643600-193643800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr1:193643600-193644000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:193643600-193644200	Enhancers	A549	lung
10	chr1:193643600-193644200	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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