Variant report

Variant	rs7305498
Chromosome Location	chr12:105826858-105826859
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2163718	1.00[AMR][1000 genomes]
rs57492262	1.00[AMR][1000 genomes]
rs57907498	1.00[AMR][1000 genomes]
rs61005937	1.00[AMR][1000 genomes]
rs61622412	1.00[AMR][1000 genomes]
rs7300017	1.00[AMR][1000 genomes]
rs7313109	1.00[AMR][1000 genomes]
rs7342398	1.00[AMR][1000 genomes]
rs7488321	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105813000-105832400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:105817800-105827200	Weak transcription	Hela-S3	cervix
3	chr12:105820600-105832600	Weak transcription	Gastric	stomach
4	chr12:105821600-105828000	Weak transcription	Right Atrium	heart
5	chr12:105822000-105827200	Weak transcription	NH-A	brain
6	chr12:105822400-105827200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:105822600-105827200	Weak transcription	HMEC	breast
8	chr12:105824000-105827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:105824200-105827000	Weak transcription	NHEK	skin
10	chr12:105824200-105828000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:105824400-105827200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:105825800-105827200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:105825800-105827400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr12:105825800-105827400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr12:105825800-105827400	Weak transcription	HSMM	muscle
16	chr12:105826000-105827800	Weak transcription	HSMMtube	muscle
17	chr12:105826000-105829600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr12:105826800-105828800	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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