Variant report

Variant	rs73057260
Chromosome Location	chr2:205429884-205429885
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs59970517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057246	0.81[AFR][1000 genomes]
rs73057257	0.86[AFR][1000 genomes]
rs73057264	1.00[AFR][1000 genomes]
rs73057286	0.86[AFR][1000 genomes]
rs73059032	1.00[AMR][1000 genomes]
rs7566282	1.00[AMR][1000 genomes]
rs7590927	1.00[AMR][1000 genomes]
rs7600990	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205411600-205438000	Weak transcription	Left Ventricle	heart
2	chr2:205417600-205434600	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:205425800-205454400	Weak transcription	HSMM	muscle
4	chr2:205427200-205430400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:205427800-205434600	Weak transcription	Ovary	ovary
6	chr2:205428000-205432400	Weak transcription	NHDF-Ad	bronchial
7	chr2:205428200-205430600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:205428200-205430800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:205428200-205430800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:205428200-205431000	Weak transcription	Adipose Nuclei	Adipose
11	chr2:205429200-205437800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:205429800-205430000	Enhancers	Aorta	Aorta
13	chr2:205429800-205430000	ZNF genes & repeats	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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