Variant report

Variant	rs73057785
Chromosome Location	chr7:7897268-7897269
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:7890228..7892788-chr7:7895329..7898203,2	K562	blood:
2	chr7:7896335..7897890-chr7:7900322..7902717,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17495987	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17562267	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17562330	0.90[EUR][1000 genomes]
rs2109972	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2159830	0.92[EUR][1000 genomes]
rs2348765	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2348766	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73057773	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73057784	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73059192	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73061231	0.80[AMR][1000 genomes]
rs7804266	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7807974	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv887478	chr7:7670718-7917360	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv887480	chr7:7681131-7917360	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv887485	chr7:7692483-7917360	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv1026564	chr7:7734846-7897847	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv887489	chr7:7770203-7913311	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1027770	chr7:7797431-7957507	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv538722	chr7:7797431-7957507	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv887490	chr7:7801684-7908970	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
12	nsv523479	chr7:7821594-7909899	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
13	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
14	nsv1030180	chr7:7860424-8059221	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
15	nsv1027123	chr7:7870047-7926288	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7870000-7900400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:7892200-7906800	Weak transcription	Fetal Heart	heart
3	chr7:7894000-7900600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:7895200-7898800	Weak transcription	Hela-S3	cervix
5	chr7:7895200-7900800	Weak transcription	Gastric	stomach
6	chr7:7895400-7898200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:7895400-7906400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:7895400-7907000	Weak transcription	Thymus	Thymus
9	chr7:7895400-7908800	Weak transcription	Left Ventricle	heart
10	chr7:7895400-7918000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:7895600-7900600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:7895600-7901000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:7895800-7898400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr7:7895800-7902600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:7896000-7897600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr7:7896000-7898800	Enhancers	Primary B cells from peripheral blood	blood
17	chr7:7896000-7898800	ZNF genes & repeats	GM12878-XiMat	blood
18	chr7:7896000-7907600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:7896400-7897600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:7896400-7897600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:7896600-7897800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:7896600-7899000	Enhancers	Primary B cells from cord blood	blood
23	chr7:7896800-7897400	Enhancers	Primary hematopoietic stem cells	blood
24	chr7:7896800-7898400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr7:7897200-7897400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr7:7897200-7898200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:7897200-7899200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:7897200-7900600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr7:7897200-7909000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:7897200-7923200	Weak transcription	Psoas Muscle	Psoas
31	chr7:7897200-7942400	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links