Variant report

Variant	rs73058083
Chromosome Location	chr12:10366515-10366516
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:10365255..10367563-chr12:11322614..11325373,2	K562	blood:
2	chr12:10363710..10369534-chr12:10376619..10381190,6	K562	blood:
3	chr12:10365073..10366945-chr12:10874439..10876168,2	K562	blood:

Variant related genes	Relation type
ENSG00000256537	Chromatin interaction
ENSG00000256712	Chromatin interaction
ENSG00000060138	Chromatin interaction
ENSG00000212127	Chromatin interaction
ENSG00000111215	Chromatin interaction
ENSG00000134539	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10845073	0.94[ASN][1000 genomes]
rs11833542	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10364000-10367400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr12:10364200-10367600	Active TSS	HSMMtube	muscle
3	chr12:10364400-10366600	Active TSS	A549	lung
4	chr12:10364400-10368200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:10364600-10366600	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr12:10364600-10366800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr12:10364600-10366800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:10364600-10366800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:10364600-10366800	Active TSS	Brain Anterior Caudate	brain
10	chr12:10364600-10366800	Active TSS	Fetal Lung	lung
11	chr12:10364600-10367000	Active TSS	Brain Substantia Nigra	brain
12	chr12:10364600-10367000	Active TSS	Stomach Smooth Muscle	stomach
13	chr12:10364600-10367200	Active TSS	Liver	Liver
14	chr12:10364600-10367200	Active TSS	Rectal Smooth Muscle	rectum
15	chr12:10364600-10367400	Active TSS	H9 Cell Line	embryonic stem cell
16	chr12:10364600-10367400	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr12:10364600-10367400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr12:10364600-10367400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr12:10364600-10367400	Active TSS	Brain Cingulate Gyrus	brain
20	chr12:10364600-10367400	Active TSS	Thymus	Thymus
21	chr12:10364600-10367600	Active TSS	H1 Cell Line	embryonic stem cell
22	chr12:10364600-10367600	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr12:10364600-10367600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr12:10364600-10367600	Active TSS	Brain Angular Gyrus	brain
25	chr12:10364600-10367600	Active TSS	Fetal Brain Female	brain
26	chr12:10364600-10367600	Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr12:10364600-10367600	Active TSS	K562	blood
28	chr12:10364600-10367600	Active TSS	Osteobl	bone
29	chr12:10364600-10367800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr12:10364600-10367800	Active TSS	Colon Smooth Muscle	Colon
31	chr12:10364600-10368000	Active TSS	HSMM	muscle
32	chr12:10364600-10368200	Active TSS	Colonic Mucosa	Colon
33	chr12:10364600-10368400	Active TSS	Fetal Kidney	kidney
34	chr12:10364600-10368800	Active TSS	Brain Inferior Temporal Lobe	brain
35	chr12:10364800-10366600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr12:10364800-10366600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
37	chr12:10364800-10366600	Active TSS	Fetal Intestine Large	intestine
38	chr12:10364800-10366600	Active TSS	Fetal Stomach	stomach
39	chr12:10364800-10366800	Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr12:10364800-10366800	Active TSS	Muscle Satellite Cultured Cells	--
41	chr12:10364800-10366800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr12:10364800-10366800	Active TSS	Fetal Intestine Small	intestine
43	chr12:10364800-10367000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr12:10364800-10367000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr12:10364800-10367000	Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr12:10364800-10367000	Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr12:10364800-10367000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr12:10364800-10367000	Active TSS	Primary T cells from cord blood	blood
49	chr12:10364800-10367000	Active TSS	Brain Hippocampus Middle	brain
50	chr12:10364800-10367000	Active TSS	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links