Variant report

Variant	rs73060075
Chromosome Location	chr3:28948555-28948556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10510613	0.82[EUR][1000 genomes]
rs11920655	0.81[EUR][1000 genomes]
rs11921879	0.81[EUR][1000 genomes]
rs17022084	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2062516	0.81[EUR][1000 genomes]
rs2133668	0.81[EUR][1000 genomes]
rs55744505	0.90[EUR][1000 genomes]
rs55779594	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55862620	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56077194	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56229054	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56242906	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56402145	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60187021	0.90[EUR][1000 genomes]
rs60978369	0.90[EUR][1000 genomes]
rs66504654	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67397931	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6806139	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73056031	0.81[EUR][1000 genomes]
rs73056033	0.81[EUR][1000 genomes]
rs73056042	0.81[EUR][1000 genomes]
rs73056045	0.81[EUR][1000 genomes]
rs73056046	0.81[EUR][1000 genomes]
rs73056050	0.81[EUR][1000 genomes]
rs73056051	0.81[EUR][1000 genomes]
rs73056063	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73056074	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73056075	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73056077	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73056080	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73056082	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73056083	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73057948	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73057951	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73057959	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73057967	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73057974	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73057993	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73058055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73058088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73060071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73060080	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73060083	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73060084	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73060088	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73060094	0.83[AMR][1000 genomes]
rs73060096	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73068072	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73068091	0.83[AMR][1000 genomes]
rs73068094	0.83[AMR][1000 genomes]
rs7622848	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7632195	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7632592	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7634786	0.82[EUR][1000 genomes]
rs7649669	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv590011	chr3:28780713-29044437	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv876653	chr3:28819123-29366164	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv876654	chr3:28882980-29105082	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1008133	chr3:28910310-28950047	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv590023	chr3:28926923-29038253	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv998023	chr3:28939535-29207462	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv590024	chr3:28947691-29192092	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv590025	chr3:28947691-29201460	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28943800-28949000	Weak transcription	Hela-S3	cervix
2	chr3:28947000-28948800	Enhancers	Dnd41	blood
3	chr3:28948000-28948600	Enhancers	HSMM	muscle

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