Variant report

Variant	rs73061644
Chromosome Location	chr1:184333682-184333683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61004935	1.00[AFR][1000 genomes]
rs73061657	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv3821	chr1:184319543-184365236	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184331600-184334200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:184332200-184333800	Enhancers	Psoas Muscle	Psoas
3	chr1:184332200-184333800	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr1:184332200-184333800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr1:184332400-184334000	Enhancers	Colonic Mucosa	Colon
6	chr1:184332400-184335800	Weak transcription	Osteobl	bone
7	chr1:184332600-184333800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr1:184332600-184336000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:184332800-184336000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:184332800-184336400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr1:184333000-184333800	Enhancers	Spleen	Spleen
12	chr1:184333200-184336200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:184333400-184333800	Enhancers	Fetal Muscle Leg	muscle
14	chr1:184333600-184333800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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