Variant report

Variant	rs73062349
Chromosome Location	chr2:213291184-213291185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11890699	1.00[AMR][1000 genomes]
rs11897313	1.00[AMR][1000 genomes]
rs11898745	1.00[AMR][1000 genomes]
rs16848497	1.00[AFR][1000 genomes]
rs16848731	1.00[AMR][1000 genomes]
rs16848749	1.00[AMR][1000 genomes]
rs57484287	0.80[AFR][1000 genomes]
rs58192836	1.00[AMR][1000 genomes]
rs58416067	0.98[AFR][1000 genomes]
rs58698074	1.00[AFR][1000 genomes]
rs59020111	1.00[AMR][1000 genomes]
rs60532973	1.00[AMR][1000 genomes]
rs60654384	1.00[AMR][1000 genomes]
rs6721859	1.00[AMR][1000 genomes]
rs73060388	0.80[AFR][1000 genomes]
rs73060392	0.89[AFR][1000 genomes]
rs73062308	1.00[AFR][1000 genomes]
rs73062313	1.00[AFR][1000 genomes]
rs73062330	1.00[AFR][1000 genomes]
rs73062345	1.00[AFR][1000 genomes]
rs73062352	0.96[AFR][1000 genomes]
rs73068256	1.00[AMR][1000 genomes]
rs73068259	1.00[AMR][1000 genomes]
rs73068266	1.00[AMR][1000 genomes]
rs73987362	1.00[AMR][1000 genomes]
rs73987364	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1014680	chr2:213142147-213301614	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213287000-213293400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:213288200-213291800	Weak transcription	Brain Anterior Caudate	brain
3	chr2:213288200-213291800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:213288400-213291400	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:213290600-213291800	Weak transcription	Brain Angular Gyrus	brain
6	chr2:213290600-213292600	Enhancers	Brain Germinal Matrix	brain
7	chr2:213290800-213294600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:213290800-213297000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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