Variant report

Variant	rs73063986
Chromosome Location	chr7:16706011-16706012
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16688385..16690209-chr7:16705421..16706953,2	MCF-7	breast:
2	chr7:16685815..16687764-chr7:16704589..16708558,3	MCF-7	breast:
3	chr7:16684388..16690329-chr7:16705903..16711033,15	MCF-7	breast:
4	chr7:16705983..16708626-chr7:16793013..16794800,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106524	Chromatin interaction
ENSG00000106537	Chromatin interaction
ENSG00000136261	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6979831	1.00[AMR][1000 genomes]
rs73063985	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73063997	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7777674	1.00[AMR][1000 genomes]
rs819013	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv830912	chr7:16623196-16791974	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16686800-16734400	Weak transcription	Lung	lung
2	chr7:16687600-16730400	Weak transcription	Thymus	Thymus
3	chr7:16688600-16707000	Weak transcription	Brain Anterior Caudate	brain
4	chr7:16691400-16714400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr7:16691800-16714600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr7:16692800-16720800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr7:16693400-16714400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr7:16695600-16714400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr7:16697000-16707600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:16697600-16706400	Weak transcription	Dnd41	blood
11	chr7:16697600-16707600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:16697800-16707200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:16697800-16714400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:16697800-16714800	Weak transcription	Ovary	ovary
15	chr7:16697800-16717400	Weak transcription	Brain Angular Gyrus	brain
16	chr7:16697800-16734400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:16697800-16736400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:16697800-16736400	Weak transcription	Fetal Brain Male	brain
19	chr7:16700600-16713600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:16700600-16715000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr7:16700800-16714400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:16701000-16706400	Weak transcription	Adipose Nuclei	Adipose
23	chr7:16701000-16707000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr7:16701000-16707200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:16701000-16714000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr7:16701000-16714800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:16701000-16720200	Weak transcription	Gastric	stomach
28	chr7:16701000-16721200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr7:16701200-16706200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:16701200-16706400	Weak transcription	Primary T cells from cord blood	blood
31	chr7:16701200-16706400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr7:16701200-16706400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr7:16701200-16706400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr7:16701200-16706400	Weak transcription	Stomach Mucosa	stomach
35	chr7:16701200-16706400	Weak transcription	HMEC	breast
36	chr7:16701200-16706600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr7:16701200-16706600	Weak transcription	NHEK	skin
38	chr7:16701200-16707400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:16701200-16707400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr7:16701200-16707600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr7:16701200-16707600	Weak transcription	HepG2	liver
42	chr7:16701200-16707800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr7:16701200-16721000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:16701200-16724600	Weak transcription	Small Intestine	intestine
45	chr7:16701200-16734000	Weak transcription	Esophagus	oesophagus
46	chr7:16701200-16736200	Weak transcription	Pancreas	Pancrea
47	chr7:16701200-16736600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr7:16701400-16707400	Weak transcription	HSMMtube	muscle
49	chr7:16701600-16707400	Weak transcription	NH-A	brain
50	chr7:16701800-16707000	Weak transcription	HSMM	muscle

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