Variant report

Variant	rs73067847
Chromosome Location	chr3:190677465-190677466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58119539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60683783	1.00[AMR][1000 genomes]
rs73065731	1.00[AMR][1000 genomes]
rs73065735	1.00[AMR][1000 genomes]
rs73065778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73065780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73065783	1.00[AMR][1000 genomes]
rs73067804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73067849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73067850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916316	chr3:190308450-190801722	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv878098	chr3:190657163-190689247	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	esv3370474	chr3:190677299-190701054	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:190677000-190677800	Enhancers	Fetal Intestine Large	intestine
2	chr3:190677400-190682800	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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