Variant report

Variant	rs730694
Chromosome Location	chr7:135950203-135950204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10235746	0.84[ASN][1000 genomes]
rs1025195	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10270360	0.91[CHB][hapmap];0.90[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11771632	0.94[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12530593	0.87[ASN][1000 genomes]
rs12666626	0.84[ASN][1000 genomes]
rs12707278	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17244557	0.84[ASN][1000 genomes]
rs17244627	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs17833808	0.83[ASN][1000 genomes]
rs1820462	0.91[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2033095	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4728385	0.85[ASN][1000 genomes]
rs4732195	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73152615	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034145	chr7:135893502-135986088	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1033206	chr7:135899512-135978595	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1018084	chr7:135901545-135983684	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1025030	chr7:135901545-135986088	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1016275	chr7:135937149-135983684	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs730694	SLC35B4	cis	cerebellum	SCAN
rs730694	KIAA1549	cis	cerebellum	SCAN
rs730694	SVOPL	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:135944400-135950800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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