Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11119591	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11119592	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1122901	0.87[ASN][1000 genomes]
rs12133838	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137464	0.93[ASN][1000 genomes]
rs12139273	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12139474	0.93[ASN][1000 genomes]
rs12143524	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1340124	0.87[ASN][1000 genomes]
rs1340125	0.87[ASN][1000 genomes]
rs2185384	0.93[ASN][1000 genomes]
rs56383511	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs60406489	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61829490	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs61829492	0.87[ASN][1000 genomes]
rs6540621	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73067497	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73069505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7519357	0.87[ASN][1000 genomes]
rs7541814	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210917400-210930800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:210919800-210928600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:210920800-210923400	Weak transcription	HSMMtube	muscle
5	chr1:210920800-210928200	Weak transcription	Esophagus	oesophagus
6	chr1:210921200-210922200	Enhancers	Brain Angular Gyrus	brain
7	chr1:210921600-210931400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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