Variant report

Variant	rs73071243
Chromosome Location	chr2:213019776-213019777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56926019	1.00[AFR][1000 genomes]
rs6729526	1.00[AFR][1000 genomes]
rs6737841	1.00[AFR][1000 genomes]
rs73071225	1.00[AFR][1000 genomes]
rs73071233	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213017600-213021400	Weak transcription	Aorta	Aorta
2	chr2:213018600-213019800	Enhancers	Fetal Heart	heart
3	chr2:213018800-213021000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:213018800-213022200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:213019000-213019800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:213019200-213019800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:213019400-213022000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:213019600-213019800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:213019600-213019800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:213019600-213021600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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