Variant report

Variant	rs73071977
Chromosome Location	chr1:210570062-210570063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210544698..210555948-chr1:210566953..210584306,65	MCF-7	breast:
2	chr1:210566042..210569012-chr1:210569613..210571239,2	MCF-7	breast:
3	chr1:210544801..210552702-chr1:210569747..210575327,18	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10489390	0.87[ASN][1000 genomes]
rs12067861	0.96[ASN][1000 genomes]
rs17708168	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17759116	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1997783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689707	0.87[ASN][1000 genomes]
rs73071983	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7519683	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7519881	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7528344	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:210559000-210584400	Weak transcription	Fetal Stomach	stomach
4	chr1:210566800-210586200	Weak transcription	Lung	lung
5	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
6	chr1:210568000-210570600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:210568000-210571000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:210568000-210571000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:210568200-210571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:210568200-210571000	Weak transcription	NHLF	lung
11	chr1:210568200-210572600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr1:210568200-210573800	Weak transcription	Aorta	Aorta
13	chr1:210568400-210570600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:210568800-210571200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:210568800-210573800	Weak transcription	Osteobl	bone
16	chr1:210569000-210570200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:210569200-210570600	Weak transcription	HSMM	muscle
18	chr1:210569200-210573600	Weak transcription	HepG2	liver
19	chr1:210569400-210573600	Weak transcription	Right Ventricle	heart
20	chr1:210569800-210570200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:210570000-210570200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr1:210570000-210570200	ZNF genes & repeats	Fetal Brain Male	brain
23	chr1:210570000-210570200	ZNF genes & repeats	Fetal Lung	lung
24	chr1:210570000-210570400	ZNF genes & repeats	HSMMtube	muscle

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