Variant report

Variant	rs7307231
Chromosome Location	chr12:67949817-67949818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7138362	1.00[AMR][1000 genomes]
rs7303880	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040339	chr12:67925018-67963239	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3430007	chr12:67947726-68241938	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67947800-67950200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr12:67947800-67950200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:67948000-67950000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr12:67948000-67950200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr12:67948200-67950000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr12:67948200-67950600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr12:67948400-67950000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr12:67948400-67950000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr12:67948400-67950400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr12:67948600-67950000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr12:67948600-67950000	Enhancers	Fetal Intestine Large	intestine
12	chr12:67948600-67950000	Enhancers	Stomach Mucosa	stomach
13	chr12:67948600-67950200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr12:67948800-67950000	Enhancers	Primary T cells from cord blood	blood
15	chr12:67948800-67950000	Enhancers	Duodenum Mucosa	Duodenum
16	chr12:67948800-67950000	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr12:67948800-67950000	Enhancers	HepG2	liver
18	chr12:67949200-67950000	Enhancers	Left Ventricle	heart
19	chr12:67949600-67951000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr12:67949800-67950000	Enhancers	Colonic Mucosa	Colon
21	chr12:67949800-67950000	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr12:67949800-67950200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr12:67949800-67953400	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links