Variant report

Variant	rs73072482
Chromosome Location	chr12:26434761-26434762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26433066..26435968-chr12:26443179..26446134,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7297586	0.96[EUR][1000 genomes]
rs73072430	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73072457	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73072478	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73072491	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817432	chr12:26355515-26873664	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26421800-26435800	Weak transcription	Gastric	stomach
2	chr12:26424800-26447000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr12:26429000-26435400	Weak transcription	GM12878-XiMat	blood
4	chr12:26429000-26440600	Weak transcription	Right Atrium	heart
5	chr12:26430000-26437400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:26430200-26438400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:26431800-26435600	Weak transcription	Fetal Thymus	thymus
8	chr12:26431800-26436200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:26432400-26438200	Weak transcription	Brain Hippocampus Middle	brain
10	chr12:26433000-26440600	Weak transcription	Spleen	Spleen
11	chr12:26433600-26440600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr12:26433800-26434800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr12:26433800-26435000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:26433800-26435000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:26433800-26435400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr12:26433800-26435600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr12:26434000-26434800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr12:26434000-26434800	Enhancers	NHDF-Ad	bronchial
19	chr12:26434000-26435000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr12:26434000-26435000	Enhancers	Ovary	ovary
21	chr12:26434000-26435600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr12:26434200-26434800	Enhancers	HSMMtube	muscle
23	chr12:26434200-26435200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr12:26434200-26435200	Enhancers	Adipose Nuclei	Adipose
25	chr12:26434200-26435400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr12:26434200-26435600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr12:26434400-26435000	Enhancers	H9 Cell Line	embryonic stem cell
28	chr12:26434400-26435600	Weak transcription	Brain Anterior Caudate	brain
29	chr12:26434400-26436800	Enhancers	HepG2	liver
30	chr12:26434600-26435000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr12:26434600-26435200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr12:26434600-26438400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr12:26434600-26439600	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links