Variant report

Variant	rs73072929
Chromosome Location	chr3:43299626-43299627
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73075060	1.00[EUR][1000 genomes]
rs73088712	1.00[EUR][1000 genomes]
rs73088719	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43284400-43300400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:43290800-43300800	Weak transcription	Brain Anterior Caudate	brain
3	chr3:43294200-43300800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:43296200-43300600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:43296400-43300000	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:43296400-43300400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:43296400-43300400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:43296800-43305800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:43297200-43299800	Enhancers	Spleen	Spleen
10	chr3:43297200-43300200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr3:43297400-43299800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:43297400-43299800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:43297400-43299800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr3:43297800-43299800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr3:43297800-43301000	Enhancers	Primary B cells from peripheral blood	blood
16	chr3:43298000-43299800	Enhancers	Primary T cells fromperipheralblood	blood
17	chr3:43298200-43300000	Enhancers	Fetal Thymus	thymus
18	chr3:43298400-43299800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr3:43298400-43299800	Enhancers	Left Ventricle	heart
20	chr3:43298400-43300600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:43298800-43300000	Enhancers	Primary B cells from cord blood	blood
22	chr3:43299200-43300200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:43299200-43300200	Enhancers	Lung	lung
24	chr3:43299200-43300600	Weak transcription	HMEC	breast
25	chr3:43299400-43299800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
26	chr3:43299400-43299800	Enhancers	Right Atrium	heart
27	chr3:43299400-43299800	Enhancers	HUVEC	blood vessel
28	chr3:43299400-43303400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr3:43299600-43299800	Enhancers	Esophagus	oesophagus
30	chr3:43299600-43300600	Enhancers	Monocytes-CD14+_RO01746	blood

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