Variant report

Variant	rs73072980
Chromosome Location	chr3:52434095-52434096
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:52424863..52429708-chr3:52432804..52436017,4	MCF-7	breast:
2	chr3:52433533..52435348-chr3:52441662..52443180,2	MCF-7	breast:
3	chr3:52433460..52436241-chr3:52446322..52448131,2	K562	blood:
4	chr3:52432574..52434187-chr3:52441112..52442710,2	MCF-7	breast:
5	chr3:52421723..52424163-chr3:52432192..52434370,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114841	Chromatin interaction
ENSG00000163930	Chromatin interaction
ENSG00000010318	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55724529	0.91[AMR][1000 genomes]
rs56366004	0.82[AMR][1000 genomes]
rs73088802	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876789	chr3:52247110-52575831	Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	nsv984542	chr3:52285682-52516115	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
3	nsv834696	chr3:52317478-52479537	Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
4	nsv834697	chr3:52400578-52579417	Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv876792	chr3:52430526-52575831	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52385400-52434600	Weak transcription	Small Intestine	intestine
2	chr3:52393200-52434800	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:52395000-52443200	Weak transcription	Right Atrium	heart
4	chr3:52408000-52436600	Weak transcription	Fetal Kidney	kidney
5	chr3:52410000-52434400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:52410600-52435400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:52414000-52435400	Weak transcription	Fetal Lung	lung
8	chr3:52414800-52434800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr3:52418600-52442200	Strong transcription	Fetal Intestine Small	intestine
10	chr3:52418800-52441800	Strong transcription	Brain Anterior Caudate	brain
11	chr3:52419000-52441800	Strong transcription	Liver	Liver
12	chr3:52419000-52442000	Strong transcription	Brain Hippocampus Middle	brain
13	chr3:52419000-52442600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr3:52419200-52435400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:52419200-52441600	Strong transcription	Fetal Stomach	stomach
16	chr3:52419200-52441800	Strong transcription	Brain Angular Gyrus	brain
17	chr3:52419200-52442000	Strong transcription	Brain Inferior Temporal Lobe	brain
18	chr3:52419600-52435600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:52420000-52442000	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr3:52420200-52442400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:52420200-52442400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:52420200-52442600	Strong transcription	Fetal Intestine Large	intestine
23	chr3:52422600-52441800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr3:52423600-52434200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr3:52425600-52442000	Strong transcription	Spleen	Spleen
26	chr3:52426200-52436000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr3:52426600-52442200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr3:52427400-52434600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr3:52427600-52434200	Weak transcription	Aorta	Aorta
30	chr3:52427800-52436000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr3:52428200-52434400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:52428200-52434400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:52428800-52434600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:52428800-52434600	Weak transcription	Ovary	ovary
35	chr3:52428800-52435200	Weak transcription	Pancreas	Pancrea
36	chr3:52429000-52434800	Weak transcription	Colonic Mucosa	Colon
37	chr3:52429200-52434400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr3:52430000-52442400	Strong transcription	Brain Substantia Nigra	brain
39	chr3:52430200-52442000	Strong transcription	Primary T cells from cord blood	blood
40	chr3:52430400-52434400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr3:52430600-52434800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr3:52430800-52434600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr3:52430800-52442600	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr3:52430800-52442600	Strong transcription	Brain Cingulate Gyrus	brain
45	chr3:52431000-52441600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr3:52431200-52435000	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr3:52431200-52437200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr3:52431800-52434200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr3:52431800-52434400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr3:52431800-52434800	Weak transcription	GM12878-XiMat	blood

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