Variant report

Variant	rs73073348
Chromosome Location	chr2:212767230-212767231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs73073334	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73073338	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73073344	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73073349	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073360	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73073363	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73073366	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73073370	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73073372	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73077351	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73077353	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv584323	chr2:212731514-212783175	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv584324	chr2:212766614-212773932	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212765200-212768800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:212765600-212771400	Weak transcription	Brain Substantia Nigra	brain
3	chr2:212766400-212768000	Weak transcription	Brain Germinal Matrix	brain
4	chr2:212766400-212771600	Weak transcription	Brain Anterior Caudate	brain
5	chr2:212766800-212768800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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