Variant report

Variant	rs73073538
Chromosome Location	chr7:16830823-16830824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:16829970..16831887-chr7:16844780..16846882,2	K562	blood:
2	chr14:57046088..57048025-chr7:16829730..16832463,2	MCF-7	breast:
3	chr7:16829911..16832805-chr7:16833008..16837157,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000070269	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10215783	0.85[AFR][1000 genomes]
rs10224098	1.00[AMR][1000 genomes]
rs10228088	1.00[AMR][1000 genomes]
rs10282680	1.00[AMR][1000 genomes]
rs28475089	0.85[AFR][1000 genomes]
rs28569833	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6957388	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16805000-16832400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr7:16811400-16833600	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:16814000-16834600	Weak transcription	Fetal Brain Male	brain
4	chr7:16814400-16843800	Weak transcription	Small Intestine	intestine
5	chr7:16815000-16838000	Weak transcription	K562	blood
6	chr7:16816800-16835000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:16819800-16838000	Weak transcription	Placenta	Placenta
8	chr7:16820200-16835400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:16823600-16835400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:16823600-16843600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:16825800-16831800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:16825800-16832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:16825800-16833600	Weak transcription	Gastric	stomach
14	chr7:16825800-16834400	Weak transcription	Fetal Brain Female	brain
15	chr7:16825800-16834600	Weak transcription	Fetal Stomach	stomach
16	chr7:16825800-16836600	Weak transcription	Left Ventricle	heart
17	chr7:16827400-16837000	Weak transcription	Primary B cells from cord blood	blood
18	chr7:16827600-16832200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:16827600-16835400	Weak transcription	Stomach Mucosa	stomach
20	chr7:16827800-16831400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr7:16827800-16832000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr7:16828000-16834400	Weak transcription	Fetal Intestine Small	intestine
23	chr7:16828600-16831400	Weak transcription	Fetal Intestine Large	intestine
24	chr7:16830600-16831800	Enhancers	NHEK	skin
25	chr7:16830800-16831400	Enhancers	A549	lung
26	chr7:16830800-16832000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:16830800-16834400	Weak transcription	HSMMtube	muscle

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