Variant report

Variant	rs73073607
Chromosome Location	chr1:197442733-197442734
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13375098	1.00[AMR][1000 genomes]
rs13375738	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6664896	1.00[AMR][1000 genomes]
rs73071661	1.00[AMR][1000 genomes]
rs73071694	1.00[AMR][1000 genomes]
rs73073636	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197440800-197456200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:197441200-197454400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:197441200-197456000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:197441400-197456400	Weak transcription	Brain Germinal Matrix	brain
5	chr1:197442400-197443400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:197442400-197443600	Weak transcription	Fetal Intestine Large	intestine
7	chr1:197442600-197443000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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