Variant report

Variant	rs73075981
Chromosome Location	chr5:41342770-41342771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10512772	1.00[AMR][1000 genomes]
rs16871272	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871274	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871282	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16871287	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57018070	1.00[AMR][1000 genomes]
rs58459277	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58484844	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58919640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59665791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59788070	1.00[AMR][1000 genomes]
rs59992488	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60248428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73075970	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73075971	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73075974	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73075985	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73075986	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73075987	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73075992	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73077913	1.00[AMR][1000 genomes]
rs73077916	1.00[AMR][1000 genomes]
rs73077939	1.00[AMR][1000 genomes]
rs73077958	1.00[AMR][1000 genomes]
rs73077999	1.00[AMR][1000 genomes]
rs73079709	1.00[AMR][1000 genomes]
rs73079714	1.00[AMR][1000 genomes]
rs7734758	1.00[AMR][1000 genomes]
rs7736904	1.00[AMR][1000 genomes]
rs992711	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1851387	chr5:41336050-41423631	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1024631	chr5:41341979-41427953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41333800-41345800	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr5:41337400-41345400	Weak transcription	Right Atrium	heart
3	chr5:41341400-41350000	Weak transcription	Left Ventricle	heart
4	chr5:41341600-41343800	Weak transcription	Fetal Heart	heart
5	chr5:41341600-41348800	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links