Variant report

Variant	rs73076495
Chromosome Location	chr3:51341825-51341826
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11716837	1.00[AFR][1000 genomes]
rs56372008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73078617	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51315400-51350000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:51331000-51343600	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:51339800-51347200	Weak transcription	Brain Germinal Matrix	brain
4	chr3:51340000-51370800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:51340200-51343800	Weak transcription	Brain Substantia Nigra	brain
6	chr3:51341000-51342000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:51341200-51342200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:51341400-51342200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:51341600-51342200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:51341600-51342200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:51341600-51342200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:51341600-51342200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:51341600-51347200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:51341600-51372000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:51341800-51342800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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