Variant report

Variant	rs73077162
Chromosome Location	chr4:3374045-3374046
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:3372648..3375101-chr4:3385736..3387279,2	K562	blood:
2	chr4:3371921..3374517-chr4:3376097..3377699,2	K562	blood:
3	chr4:3372799..3374407-chr4:3477096..3479436,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159788	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73079035	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv878456	chr4:3215835-3467519	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv428106	chr4:3226182-3752322	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv878462	chr4:3311548-3505448	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1007847	chr4:3317904-3527357	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv537001	chr4:3317904-3527357	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv878463	chr4:3363994-3498896	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3368800-3376800	Enhancers	Spleen	Spleen
2	chr4:3369200-3374800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:3370000-3374400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
4	chr4:3370400-3374600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:3371000-3374400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:3371200-3375800	Weak transcription	Gastric	stomach
7	chr4:3371600-3378000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:3371800-3374400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr4:3371800-3376000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:3372000-3374200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr4:3372000-3374400	Enhancers	Fetal Heart	heart
12	chr4:3372000-3375000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:3372200-3374200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr4:3372200-3374200	Weak transcription	Colonic Mucosa	Colon
15	chr4:3372200-3374400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:3372200-3374400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:3372200-3374400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr4:3372200-3375600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr4:3372200-3375600	Enhancers	Adipose Nuclei	Adipose
20	chr4:3372200-3377400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:3372200-3377600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr4:3372200-3378000	Weak transcription	Aorta	Aorta
23	chr4:3372200-3382000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr4:3372200-3386400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr4:3372400-3374200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:3372400-3374600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr4:3372400-3375000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:3372400-3375000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr4:3372400-3375000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr4:3372400-3375200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr4:3372400-3375200	Enhancers	Left Ventricle	heart
32	chr4:3372400-3375400	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr4:3372400-3375400	Enhancers	Right Ventricle	heart
34	chr4:3372400-3375600	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr4:3372400-3375600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr4:3372400-3377400	Weak transcription	Osteobl	bone
37	chr4:3372400-3377800	Weak transcription	NHDF-Ad	bronchial
38	chr4:3372400-3382000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr4:3372600-3374400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:3372600-3374400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr4:3372600-3374400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:3372600-3374600	Enhancers	Right Atrium	heart
43	chr4:3372600-3377400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr4:3372600-3377600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:3372800-3374200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr4:3372800-3374200	Flanking Active TSS	Brain Anterior Caudate	brain
47	chr4:3372800-3374400	Enhancers	Fetal Lung	lung
48	chr4:3372800-3374400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
49	chr4:3372800-3374400	Bivalent Enhancer	Fetal Muscle Leg	muscle
50	chr4:3372800-3375200	Enhancers	Ovary	ovary

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