Variant report

Variant	rs73077982
Chromosome Location	chr4:8199751-8199752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:8199393..8202510-chr4:8203198..8206188,4	MCF-7	breast:
2	chr4:8181697..8186152-chr4:8199354..8203571,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125089	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1281116	0.83[EUR][1000 genomes]
rs1281121	0.85[EUR][1000 genomes]
rs55727461	0.95[EUR][1000 genomes]
rs56133518	0.97[EUR][1000 genomes]
rs56318069	0.91[EUR][1000 genomes]
rs56773912	0.96[EUR][1000 genomes]
rs58214166	0.96[EUR][1000 genomes]
rs58829078	0.97[EUR][1000 genomes]
rs59350156	0.96[EUR][1000 genomes]
rs61366997	0.90[EUR][1000 genomes]
rs73077985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077988	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077994	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077998	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73079705	0.95[EUR][1000 genomes]
rs73079711	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73798643	0.92[EUR][1000 genomes]
rs73798644	0.83[EUR][1000 genomes]
rs73798645	0.93[EUR][1000 genomes]
rs73800411	0.91[EUR][1000 genomes]
rs73800413	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878591	chr4:8063501-8207083	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1010809	chr4:8097627-8292324	Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv878593	chr4:8125788-8233341	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv461216	chr4:8154534-8276411	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv593626	chr4:8154534-8276411	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv878594	chr4:8154534-8286916	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv878595	chr4:8154534-8390646	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv470012	chr4:8171401-8233341	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv878596	chr4:8171401-8254784	Genic enhancers Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv878597	chr4:8171401-8294196	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
12	nsv829853	chr4:8172065-8320868	Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
13	nsv869928	chr4:8195069-8214848	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv878598	chr4:8195705-8254784	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv878599	chr4:8195705-8293398	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
16	esv2763338	chr4:8199091-8260812	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8185200-8202600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:8190200-8200400	Enhancers	Fetal Thymus	thymus
3	chr4:8191400-8199800	Weak transcription	Liver	Liver
4	chr4:8191800-8200800	Enhancers	Placenta	Placenta
5	chr4:8192200-8200400	Weak transcription	Brain Anterior Caudate	brain
6	chr4:8192400-8200600	Weak transcription	Brain Substantia Nigra	brain
7	chr4:8193000-8200600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:8193600-8200400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr4:8193600-8200600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr4:8194200-8201000	Weak transcription	Psoas Muscle	Psoas
11	chr4:8195000-8200000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr4:8195000-8200000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:8195000-8200000	Weak transcription	Fetal Heart	heart
14	chr4:8195000-8200200	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:8195000-8200400	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:8195200-8199800	Weak transcription	Fetal Kidney	kidney
17	chr4:8195200-8199800	Weak transcription	GM12878-XiMat	blood
18	chr4:8195200-8200000	Weak transcription	Hela-S3	cervix
19	chr4:8195400-8200600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:8195400-8200800	Enhancers	Fetal Muscle Leg	muscle
21	chr4:8195600-8200600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:8195600-8200600	Enhancers	Esophagus	oesophagus
23	chr4:8195800-8200600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr4:8195800-8204200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:8196000-8200000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr4:8196000-8200600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr4:8196200-8200000	Weak transcription	Fetal Intestine Large	intestine
28	chr4:8196200-8200200	Enhancers	Adipose Nuclei	Adipose
29	chr4:8196600-8200400	Enhancers	Primary hematopoietic stem cells	blood
30	chr4:8196600-8200600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr4:8197000-8200200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:8197200-8200000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:8198000-8200000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:8198000-8200200	Weak transcription	Fetal Lung	lung
35	chr4:8198200-8200200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr4:8198400-8199800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr4:8198600-8200200	Weak transcription	Left Ventricle	heart
38	chr4:8198600-8200200	Weak transcription	Right Atrium	heart
39	chr4:8198800-8200000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:8198800-8200000	Weak transcription	Right Ventricle	heart
41	chr4:8198800-8201400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:8199000-8200600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr4:8199000-8200800	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr4:8199200-8200000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:8199200-8200200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr4:8199200-8200600	Enhancers	Pancreas	Pancrea
47	chr4:8199200-8200600	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr4:8199200-8200600	Enhancers	Spleen	Spleen
49	chr4:8199400-8200000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
50	chr4:8199400-8200000	Bivalent Enhancer	HepG2	liver

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