Variant report

Variant	rs7307799
Chromosome Location	chr12:60648507-60648508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10747869	0.85[AFR][1000 genomes]
rs11173375	0.90[AFR][1000 genomes]
rs11173381	0.87[AFR][1000 genomes]
rs11173388	0.87[AFR][1000 genomes]
rs1304314	0.85[AFR][1000 genomes]
rs1354471	0.85[AFR][1000 genomes]
rs3902471	0.90[AFR][1000 genomes]
rs4320983	0.90[AFR][1000 genomes]
rs4435040	0.83[AFR][1000 genomes]
rs4520627	0.85[AFR][1000 genomes]
rs4556582	0.90[AFR][1000 genomes]
rs7132436	0.83[AFR][1000 genomes]
rs7135299	0.83[AFR][1000 genomes]
rs7139186	0.85[AFR][1000 genomes]
rs7297241	0.83[AFR][1000 genomes]
rs7300012	0.82[AFR][1000 genomes]
rs7300515	0.92[AFR][1000 genomes]
rs7961348	0.81[AFR][1000 genomes]
rs7975734	0.85[AFR][1000 genomes]
rs978912	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60647600-60650800	Weak transcription	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links