Variant report

Variant	rs73078994
Chromosome Location	chr7:16659856-16659857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16659196..16661017-chr7:16698458..16700775,2	K562	blood:
2	chr7:16652156..16654551-chr7:16658497..16660099,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12113331	1.00[AMR][1000 genomes]
rs6976324	1.00[AMR][1000 genomes]
rs73297254	1.00[AMR][1000 genomes]
rs73297273	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv830912	chr7:16623196-16791974	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv887758	chr7:16632561-16668034	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv887759	chr7:16642995-16686940	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16636400-16682600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr7:16637400-16668400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:16637800-16661600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:16637800-16664800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:16638000-16660200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:16638000-16670800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:16638400-16661600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:16638400-16670000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:16638400-16670200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:16640400-16668000	Weak transcription	HSMMtube	muscle
11	chr7:16640600-16663400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:16640800-16677000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:16642000-16674000	Weak transcription	Psoas Muscle	Psoas
14	chr7:16643600-16663000	Weak transcription	HUVEC	blood vessel
15	chr7:16643600-16676000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:16643600-16681000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr7:16643800-16670200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:16644400-16677600	Weak transcription	Brain Substantia Nigra	brain
19	chr7:16644600-16678000	Weak transcription	Fetal Brain Male	brain
20	chr7:16646600-16683000	Weak transcription	Colonic Mucosa	Colon
21	chr7:16647600-16666400	Strong transcription	Liver	Liver
22	chr7:16648200-16668200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr7:16649000-16663200	Weak transcription	Brain Hippocampus Middle	brain
24	chr7:16649600-16662800	Weak transcription	HMEC	breast
25	chr7:16651800-16676600	Weak transcription	Small Intestine	intestine
26	chr7:16651800-16683600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:16652000-16674000	Weak transcription	Stomach Mucosa	stomach
28	chr7:16652200-16666600	Strong transcription	Fetal Intestine Large	intestine
29	chr7:16652600-16666200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:16652800-16665200	Strong transcription	Adipose Nuclei	Adipose
31	chr7:16653000-16665800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:16654200-16661000	Strong transcription	Dnd41	blood
33	chr7:16654400-16673800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr7:16654600-16662800	Weak transcription	NH-A	brain
35	chr7:16655000-16682400	Weak transcription	Brain Angular Gyrus	brain
36	chr7:16655200-16661800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr7:16655200-16663000	Weak transcription	Fetal Brain Female	brain
38	chr7:16655200-16664200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr7:16655400-16667800	Weak transcription	K562	blood
40	chr7:16655400-16682600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr7:16655400-16682600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr7:16655600-16668400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:16655800-16662600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr7:16655800-16674000	Weak transcription	Right Atrium	heart
45	chr7:16655800-16682600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr7:16656000-16664400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:16656000-16683400	Weak transcription	Brain Germinal Matrix	brain
48	chr7:16656200-16660400	Strong transcription	Placenta Amnion	Placenta Amnion
49	chr7:16656400-16661400	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr7:16656600-16661000	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links