Variant report

Variant	rs73079457
Chromosome Location	chr2:213305333-213305334
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16848746	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16848762	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57136034	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062365	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73063136	1.00[AMR][1000 genomes]
rs73063170	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73079466	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73079471	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73080834	1.00[AMR][1000 genomes]
rs73080838	1.00[AMR][1000 genomes]
rs73080855	1.00[AMR][1000 genomes]
rs7586778	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	esv34076	chr2:213298576-213306627	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213302000-213306600	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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