Variant report

Variant	rs73079510
Chromosome Location	chr12:29390506-29390507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:29389871..29390513-chr12:29470261..29471138,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257176	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11050015	1.00[EUR][1000 genomes]
rs11050022	1.00[EUR][1000 genomes]
rs11050023	1.00[EUR][1000 genomes]
rs11050031	1.00[EUR][1000 genomes]
rs11050102	1.00[EUR][1000 genomes]
rs11050109	1.00[EUR][1000 genomes]
rs11050127	1.00[EUR][1000 genomes]
rs11050130	1.00[EUR][1000 genomes]
rs11050131	1.00[EUR][1000 genomes]
rs11834972	1.00[EUR][1000 genomes]
rs12298807	1.00[EUR][1000 genomes]
rs12299296	1.00[EUR][1000 genomes]
rs12302693	1.00[EUR][1000 genomes]
rs12305640	1.00[EUR][1000 genomes]
rs12305958	1.00[EUR][1000 genomes]
rs12306317	1.00[EUR][1000 genomes]
rs12308307	1.00[EUR][1000 genomes]
rs12309725	1.00[EUR][1000 genomes]
rs12311253	1.00[EUR][1000 genomes]
rs12313631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12314772	1.00[EUR][1000 genomes]
rs12315253	1.00[EUR][1000 genomes]
rs12315255	1.00[EUR][1000 genomes]
rs12316813	1.00[EUR][1000 genomes]
rs12318343	1.00[EUR][1000 genomes]
rs12319491	1.00[EUR][1000 genomes]
rs12319668	1.00[EUR][1000 genomes]
rs12322477	1.00[EUR][1000 genomes]
rs56235020	1.00[EUR][1000 genomes]
rs59858313	1.00[EUR][1000 genomes]
rs67200761	1.00[EUR][1000 genomes]
rs73061899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73063608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73063634	1.00[EUR][1000 genomes]
rs73063636	1.00[EUR][1000 genomes]
rs73063639	1.00[EUR][1000 genomes]
rs73063778	1.00[EUR][1000 genomes]
rs73063781	1.00[EUR][1000 genomes]
rs73063782	1.00[EUR][1000 genomes]
rs73063783	1.00[EUR][1000 genomes]
rs73065614	1.00[EUR][1000 genomes]
rs73065622	1.00[EUR][1000 genomes]
rs73065637	1.00[EUR][1000 genomes]
rs73067717	1.00[EUR][1000 genomes]
rs73067752	1.00[EUR][1000 genomes]
rs73071945	1.00[EUR][1000 genomes]
rs73071951	1.00[EUR][1000 genomes]
rs73071976	1.00[EUR][1000 genomes]
rs73071996	1.00[EUR][1000 genomes]
rs73073756	1.00[EUR][1000 genomes]
rs73073757	1.00[EUR][1000 genomes]
rs73073797	1.00[EUR][1000 genomes]
rs73073798	1.00[EUR][1000 genomes]
rs73075593	1.00[EUR][1000 genomes]
rs73077508	1.00[EUR][1000 genomes]
rs73077524	1.00[EUR][1000 genomes]
rs73077528	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73077530	1.00[EUR][1000 genomes]
rs73077591	1.00[EUR][1000 genomes]
rs73077598	1.00[EUR][1000 genomes]
rs73079508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73079530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7966961	1.00[EUR][1000 genomes]
rs7980369	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29366200-29393200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:29379000-29393400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr12:29379600-29394600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr12:29380400-29392000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:29381000-29393200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr12:29381800-29394600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:29381800-29394800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:29382200-29393400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr12:29383200-29391600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr12:29383400-29392000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr12:29384000-29393200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr12:29384400-29393200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr12:29387800-29391800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr12:29388400-29391800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr12:29388600-29391800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr12:29388600-29392000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr12:29388600-29394800	Weak transcription	NHEK	skin
18	chr12:29388800-29391800	Weak transcription	NH-A	brain
19	chr12:29388800-29394600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr12:29390000-29390800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:29390200-29390800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr12:29390200-29394800	Enhancers	HUVEC	blood vessel
23	chr12:29390400-29394400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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