Variant report

Variant	rs73080371
Chromosome Location	chr12:25852503-25852504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10505963	1.00[AFR][1000 genomes]
rs73086143	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832354	chr12:25785145-25982021	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25851000-25853000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:25851200-25853000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:25851600-25853200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:25851600-25854400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr12:25851600-25854400	Enhancers	HMEC	breast
6	chr12:25851800-25852600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr12:25851800-25852600	Enhancers	NHDF-Ad	bronchial
8	chr12:25851800-25854600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:25851800-25854600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr12:25851800-25854600	Enhancers	HUVEC	blood vessel
11	chr12:25851800-25860400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:25852400-25853000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr12:25852400-25854600	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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