Variant report

Variant	rs73080940
Chromosome Location	chr4:3482296-3482297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr4:3482218-3482638	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr4:3482214-3482612	HepG2	liver:	n/a	chr4:3482409-3482428 chr4:3482445-3482459 chr4:3482413-3482423
3	CEBPB	chr4:3482254-3482576	Hela-S3	cervix:	n/a	n/a
4	RAD21	chr4:3482215-3482603	HepG2	liver:	n/a	chr4:3482409-3482428 chr4:3482445-3482459 chr4:3482413-3482423
5	ZNF384	chr4:3482287-3482489	GM12878	blood:	n/a	n/a
6	MAX	chr4:3482284-3482623	Hela-S3	cervix:	n/a	n/a
7	CTCF	chr4:3482279-3482557	SK-N-SH_RA	brain:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
8	CEBPB	chr4:3482224-3482577	IMR90	lung:	n/a	n/a
9	MAZ	chr4:3482296-3482575	GM12878	blood:	n/a	n/a
10	CTCF	chr4:3482293-3482613	H1-hESC	embryonic stem cell:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
11	MAZ	chr4:3482168-3482720	IMR90	lung:	n/a	n/a
12	CTCF	chr4:3481821-3482909	SK-N-SH	brain:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
13	MYC	chr4:3482296-3482553	MCF10A-Er-Src	breast:	n/a	n/a
14	E2F4	chr4:3482282-3482567	MCF10A-Er-Src	breast:	n/a	chr4:3482449-3482459
15	CTCF	chr4:3482201-3482688	K562	blood:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
16	RAD21	chr4:3482265-3482639	A549	lung:	n/a	chr4:3482409-3482428 chr4:3482445-3482459 chr4:3482413-3482423
17	CTCF	chr4:3482257-3482593	GM13977	blood:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
18	RAD21	chr4:3482216-3482583	K562	blood:	n/a	chr4:3482409-3482428 chr4:3482445-3482459 chr4:3482413-3482423
19	JUND	chr4:3482269-3482589	K562	blood:	n/a	n/a
20	ATF2	chr4:3482260-3482611	H1-hESC	embryonic stem cell:	n/a	n/a
21	CTCF	chr4:3482278-3482592	Pancreas_OC	pancreas:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
22	CTCF	chr4:3482260-3482410	GM12870	blood:	n/a	n/a
23	SMC3	chr4:3482246-3482607	GM12878	blood:	n/a	chr4:3482413-3482427
24	SMC3	chr4:3482216-3482701	Hela-S3	cervix:	n/a	chr4:3482622-3482632 chr4:3482413-3482427
25	CEBPB	chr4:3482279-3482561	A549	lung:	n/a	n/a
26	CTCF	chr4:3482274-3482593	K562	blood:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
27	NFIC	chr4:3482224-3483226	ECC-1	luminal epithelium:	n/a	n/a
28	RAD21	chr4:3482209-3482576	MCF-7	breast:	n/a	chr4:3482409-3482428 chr4:3482445-3482459 chr4:3482413-3482423
29	EP300	chr4:3482220-3483505	ECC-1	luminal epithelium:	n/a	chr4:3482442-3482458 chr4:3482558-3482574 chr4:3483064-3483080
30	CTCF	chr4:3482295-3482576	HepG2	liver:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
31	CTCF	chr4:3482293-3482578	LNCaP	prostate:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
32	CTCF	chr4:3482267-3482600	Gliobla	brain:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
33	CTCF	chr4:3482288-3482684	MCF-7	breast:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
34	MAX	chr4:3482221-3482649	K562	blood:	n/a	n/a
35	BRCA1	chr4:3482275-3482539	H1-hESC	embryonic stem cell:	n/a	n/a
36	RAD21	chr4:3482229-3482661	H1-hESC	embryonic stem cell:	n/a	chr4:3482409-3482428 chr4:3482445-3482459 chr4:3482644-3482654 chr4:3482413-3482423
37	MAX	chr4:3482268-3483234	ECC-1	luminal epithelium:	n/a	chr4:3482739-3482749
38	SMC3	chr4:3482104-3482912	SK-N-SH	brain:	n/a	chr4:3482622-3482632 chr4:3482413-3482427
39	RAD21	chr4:3482222-3482590	GM12878	blood:	n/a	chr4:3482409-3482428 chr4:3482445-3482459 chr4:3482413-3482423
40	ZC3H11A	chr4:3482281-3482479	K562	blood:	n/a	n/a
41	NANOG	chr4:3482282-3482623	H1-hESC	embryonic stem cell:	n/a	n/a
42	MAFK	chr4:3482290-3482490	K562	blood:	n/a	n/a
43	CTCF	chr4:3482283-3482614	Lung_OC	lung:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
44	RAD21	chr4:3482219-3482608	H1-hESC	embryonic stem cell:	n/a	chr4:3482409-3482428 chr4:3482445-3482459 chr4:3482413-3482423
45	RAD21	chr4:3482215-3482746	HCT-116	colon:	n/a	chr4:3482409-3482428 chr4:3482445-3482459 chr4:3482644-3482654 chr4:3482413-3482423
46	CTCF	chr4:3482217-3482871	HCT-116	colon:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
47	CTCF	chr4:3482214-3482675	IMR90	lung:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
48	CTCF	chr4:3482293-3482589	A549	lung:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
49	CTCF	chr4:3482222-3482673	H1-hESC	embryonic stem cell:	n/a	chr4:3482413-3482426 chr4:3482411-3482429
50	ZNF143	chr4:3482240-3482638	H1-hESC	embryonic stem cell:	n/a	chr4:3482529-3482539

No.	Distal block	Cell Line	Cell type
1	chr4:3481101..3483332-chr4:3533329..3535150,2	MCF-7	breast:
2	chr4:3444953..3445626-chr4:3481708..3482572,4	MCF-7	breast:
3	chr4:3108064..3109057-chr4:3481789..3482473,3	K562	blood:
4	chr4:3481517..3483185-chr4:3946552..3949445,2	MCF-7	breast:
5	chr4:3347519..3348454-chr4:3481863..3482872,4	K562	blood:
6	chr4:3481541..3484039-chr4:3515010..3518175,3	MCF-7	breast:
7	chr4:3344785..3347772-chr4:3481036..3482952,2	MCF-7	breast:
8	chr4:3445342..3446316-chr4:3482040..3482882,2	K562	blood:
9	chr4:3481020..3484183-chr4:3488790..3491004,5	K562	blood:
10	chr4:3347603..3348412-chr4:3481940..3482894,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRPAP1-4	chr4:3480710-3483420	ucscGeneNc_uc003ghh_2

Variant related genes	Relation type
DOK7	TF binding region
ENSG00000163956	Chromatin interaction
ENSG00000109758	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6836777	0.81[ASN][1000 genomes]
rs6842419	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:56 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428106	chr4:3226182-3752322	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv878462	chr4:3311548-3505448	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1007847	chr4:3317904-3527357	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv537001	chr4:3317904-3527357	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv878463	chr4:3363994-3498896	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv428435	chr4:3386773-3623321	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv933265	chr4:3392824-4283640	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
8	esv2757918	chr4:3394344-4350986	Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	esv2759219	chr4:3394344-4350986	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
10	nsv878464	chr4:3405165-3505448	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv878465	chr4:3405165-3566567	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	esv1791851	chr4:3407753-3534022	Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
13	nsv1000383	chr4:3412585-3839781	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
14	nsv878469	chr4:3413209-3566567	Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
15	nsv878470	chr4:3413209-3566567	Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	nsv878471	chr4:3413209-3884998	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
17	esv1816543	chr4:3414654-3942867	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
18	nsv1001328	chr4:3421979-3654381	Bivalent/Poised TSS Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
19	nsv878474	chr4:3422211-3504562	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	nsv1008575	chr4:3429062-3487322	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	nsv967719	chr4:3429579-3535969	Genic enhancers Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
22	nsv470004	chr4:3429856-3584373	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
23	nsv878475	chr4:3431342-3504562	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
24	nsv516505	chr4:3434336-3504562	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
25	nsv1011554	chr4:3436478-3975772	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
26	nsv537002	chr4:3436478-3975772	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
27	nsv878476	chr4:3436588-3504562	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
28	nsv878477	chr4:3438643-3584059	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
29	nsv4202	chr4:3439530-3484873	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
30	nsv829840	chr4:3444216-3623031	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
31	nsv878478	chr4:3447243-3566567	Bivalent Enhancer Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
32	nsv1002774	chr4:3450810-3577017	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
33	nsv1012371	chr4:3450810-3878976	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
34	nsv537003	chr4:3450810-3878976	Active TSS Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
35	nsv998670	chr4:3453787-3909535	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
36	nsv878479	chr4:3461900-3498896	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
37	nsv878480	chr4:3461900-3504562	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
38	nsv878481	chr4:3461900-3566567	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
39	nsv878482	chr4:3461900-3573260	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
40	nsv878483	chr4:3461900-3683269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
41	nsv1008394	chr4:3462618-3577017	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
42	esv1806490	chr4:3463724-3501161	Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
43	esv1808609	chr4:3463924-3500961	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
44	nsv433362	chr4:3467519-3485786	Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
45	nsv461170	chr4:3471754-3496940	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
46	nsv593458	chr4:3471754-3496940	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
47	esv2757031	chr4:3472162-3510598	Bivalent Enhancer Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
48	nsv998512	chr4:3472878-3643547	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
49	nsv537004	chr4:3472878-3643547	Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
50	nsv878484	chr4:3473139-3499153	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3466400-3482400	Weak transcription	Right Atrium	heart
2	chr4:3467000-3493600	Weak transcription	Aorta	Aorta
3	chr4:3468800-3486400	Weak transcription	Psoas Muscle	Psoas
4	chr4:3475400-3485200	Weak transcription	Pancreas	Pancrea
5	chr4:3476800-3490800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr4:3479000-3482400	Enhancers	Fetal Muscle Leg	muscle
7	chr4:3480400-3485000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:3480600-3484000	Weak transcription	Gastric	stomach
9	chr4:3480800-3482600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:3481000-3482600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:3481000-3489200	Enhancers	Fetal Heart	heart
12	chr4:3481200-3483200	Enhancers	HSMM	muscle
13	chr4:3481200-3485600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr4:3481200-3488800	Enhancers	Left Ventricle	heart
15	chr4:3481400-3482600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:3481400-3486200	Enhancers	Right Ventricle	heart
17	chr4:3481400-3491200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:3481600-3482800	Enhancers	Spleen	Spleen
19	chr4:3481800-3482600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:3481800-3483000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr4:3481800-3483000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr4:3481800-3483000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr4:3481800-3484000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr4:3481800-3485000	Enhancers	HSMMtube	muscle
25	chr4:3481800-3485400	Enhancers	Primary B cells from peripheral blood	blood
26	chr4:3482000-3482400	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr4:3482000-3483400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr4:3482200-3482400	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr4:3482200-3482600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:3482200-3482600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr4:3482200-3482600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
32	chr4:3482200-3482800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
33	chr4:3482200-3482800	Bivalent Enhancer	Fetal Intestine Small	intestine
34	chr4:3482200-3482800	Enhancers	Stomach Smooth Muscle	stomach
35	chr4:3482200-3483200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:3482200-3483800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:3482200-3485600	Enhancers	Muscle Satellite Cultured Cells	--
38	chr4:3482200-3486600	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links