Variant report

Variant	rs73082037
Chromosome Location	chr3:53100086-53100087
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1811351	0.84[ASN][1000 genomes]
rs2253675	0.82[EUR][1000 genomes]
rs2564922	0.81[EUR][1000 genomes]
rs2564929	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2564939	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2581798	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55950520	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56058643	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56386026	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60579898	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62255925	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62255926	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62255929	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62255931	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73082047	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs930122	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876800	chr3:53038786-53113762	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs73082037	RFT1	cis	Artery Aorta	GTEx
rs73082037	RFT1	cis	Artery Tibial	GTEx
rs73082037	SERBP1P3	cis	lung	GTEx
rs73082037	SERBP1P3	cis	Esophagus Muscularis	GTEx
rs73082037	RFT1	cis	Thyroid	GTEx
rs73082037	SERBP1P3	cis	Thyroid	GTEx
rs73082037	RFT1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53098400-53106000	Weak transcription	Spleen	Spleen
2	chr3:53099600-53101800	Weak transcription	Fetal Intestine Small	intestine
3	chr3:53100000-53100200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links