Variant report

Variant	rs73082363
Chromosome Location	chr3:49130378-49130379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:49128910..49133326-chr3:49168969..49172072,7	MCF-7	breast:
2	chr3:49128213..49133667-chr3:49140039..49144982,11	MCF-7	breast:
3	chr3:49128926..49138937-chr3:49145476..49160975,31	K562	blood:
4	chr3:49129337..49131574-chr3:49165635..49167419,2	K562	blood:
5	chr3:49130002..49134881-chr3:49145556..49149434,6	K562	blood:
6	chr3:49043286..49045415-chr3:49130113..49131659,2	MCF-7	breast:
7	chr3:49025745..49029382-chr3:49129931..49133067,7	MCF-7	breast:
8	chr3:49129916..49132990-chr3:49447157..49451022,6	K562	blood:
9	chr3:49130342..49133374-chr3:49140037..49144249,8	K562	blood:
10	chr3:49129847..49133782-chr3:49155056..49162049,12	MCF-7	breast:
11	chr3:49062154..49067981-chr3:49128951..49132856,8	K562	blood:
12	chr3:49129088..49132112-chr3:49168482..49170657,4	MCF-7	breast:
13	chr3:49055445..49060745-chr3:49128874..49135153,17	MCF-7	breast:
14	chr3:49130133..49131650-chr3:49157909..49159837,2	K562	blood:
15	chr3:49052218..49068794-chr3:49126865..49133927,44	K562	blood:
16	chr3:49065295..49067964-chr3:49130021..49133372,4	MCF-7	breast:
17	chr3:49054288..49061452-chr3:49128946..49133927,24	K562	blood:
18	chr3:49130019..49133719-chr3:49139545..49142279,6	K562	blood:
19	chr3:49043481..49046136-chr3:49130216..49133089,2	K562	blood:
20	chr3:49056708..49059801-chr3:49129963..49133658,5	MCF-7	breast:
21	chr3:49128925..49131724-chr3:49157587..49160255,2	MCF-7	breast:
22	chr3:49062784..49068653-chr3:49129538..49133266,11	MCF-7	breast:
23	chr3:49130018..49132497-chr3:49447157..49449829,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000172046	Chromatin interaction
ENSG00000223343	Chromatin interaction
ENSG00000067560	Chromatin interaction
ENSG00000172037	Chromatin interaction
ENSG00000272434	Chromatin interaction
ENSG00000178057	Chromatin interaction
ENSG00000178252	Chromatin interaction
ENSG00000145022	Chromatin interaction
ENSG00000207605	Chromatin interaction
ENSG00000178035	Chromatin interaction
ENSG00000178149	Chromatin interaction
ENSG00000178467	Chromatin interaction
ENSG00000199032	Chromatin interaction
ENSG00000172053	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34290943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34759087	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61760236	1.00[ASN][1000 genomes]
rs72624911	1.00[ASN][1000 genomes]
rs73082331	1.00[ASN][1000 genomes]
rs73082337	1.00[ASN][1000 genomes]
rs73082357	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876764	chr3:49040462-49245645	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	279 gene(s)	inside rSNPs	diseases
2	nsv834686	chr3:49106047-49270556	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv876765	chr3:49119063-49160671	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49115000-49130600	Weak transcription	Spleen	Spleen
2	chr3:49117200-49130400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:49126200-49130400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:49129400-49130400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:49129600-49130400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr3:49129600-49130400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:49129600-49130400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr3:49129600-49130400	Flanking Active TSS	Rectal Smooth Muscle	rectum
9	chr3:49129600-49130400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr3:49129600-49130400	Flanking Active TSS	Osteobl	bone
11	chr3:49129600-49130600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr3:49129600-49130600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr3:49129600-49130600	Flanking Active TSS	Brain Anterior Caudate	brain
14	chr3:49129600-49130600	Flanking Active TSS	Brain Germinal Matrix	brain
15	chr3:49129600-49130600	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr3:49129600-49130600	Flanking Active TSS	HUVEC	blood vessel
17	chr3:49129600-49130800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:49129600-49130800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:49129600-49130800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr3:49129600-49131000	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr3:49129600-49132200	Active TSS	Fetal Kidney	kidney
22	chr3:49129600-49132400	Active TSS	Fetal Brain Female	brain
23	chr3:49129600-49132600	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr3:49129800-49130400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:49129800-49130400	Flanking Active TSS	Dnd41	blood
26	chr3:49129800-49130600	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr3:49129800-49130800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr3:49129800-49130800	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr3:49129800-49130800	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr3:49129800-49130800	Flanking Active TSS	Liver	Liver
31	chr3:49129800-49130800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr3:49129800-49131000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:49129800-49131800	Active TSS	HMEC	breast
34	chr3:49129800-49132000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:49129800-49132000	Active TSS	GM12878-XiMat	blood
36	chr3:49129800-49132000	Active TSS	K562	blood
37	chr3:49129800-49132200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:49129800-49132200	Active TSS	NHLF	lung
39	chr3:49129800-49132400	Active TSS	HSMM	muscle
40	chr3:49129800-49132600	Active TSS	H1 Cell Line	embryonic stem cell
41	chr3:49129800-49132600	Active TSS	H9 Cell Line	embryonic stem cell
42	chr3:49129800-49132600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr3:49129800-49132600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:49129800-49132600	Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr3:49129800-49132600	Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr3:49130000-49130400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr3:49130000-49130400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
48	chr3:49130000-49130400	Flanking Active TSS	Brain Hippocampus Middle	brain
49	chr3:49130000-49130400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr3:49130000-49130400	Flanking Active TSS	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links