Variant report

Variant	rs73082464
Chromosome Location	chr1:212507467-212507468
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1342151	0.87[AFR][1000 genomes]
rs2087588	1.00[AMR][1000 genomes]
rs2218450	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56325803	1.00[AMR][1000 genomes]
rs56988493	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57547209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58961370	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59424248	0.85[AFR][1000 genomes]
rs6675634	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6692305	0.90[AMR][1000 genomes]
rs73082467	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73082472	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73084500	1.00[AMR][1000 genomes]
rs7530292	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999738	chr1:212218618-212513690	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1009376	chr1:212292357-212680320	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv549139	chr1:212332294-212876902	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	nsv997629	chr1:212404489-212658785	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv535286	chr1:212404489-212658785	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212467400-212526000	Weak transcription	A549	lung
2	chr1:212479200-212525400	Weak transcription	Aorta	Aorta
3	chr1:212486200-212526000	Weak transcription	HUVEC	blood vessel
4	chr1:212489600-212554800	Weak transcription	Small Intestine	intestine
5	chr1:212490000-212507800	Weak transcription	Brain Angular Gyrus	brain
6	chr1:212493800-212533400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:212498000-212526200	Weak transcription	Fetal Brain Male	brain
8	chr1:212499800-212525400	Weak transcription	Gastric	stomach
9	chr1:212500000-212540400	Weak transcription	Stomach Mucosa	stomach
10	chr1:212501000-212533600	Weak transcription	Fetal Heart	heart
11	chr1:212501400-212525800	Weak transcription	Pancreas	Pancrea
12	chr1:212501400-212526200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:212501400-212540800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:212501800-212510800	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr1:212501800-212540800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr1:212502000-212508200	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr1:212502200-212516600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr1:212502200-212526000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr1:212502400-212528200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:212502600-212512000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:212502600-212563400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr1:212502600-212564600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr1:212502800-212509800	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr1:212502800-212514000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:212502800-212541400	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr1:212503000-212519200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:212503600-212507600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:212504000-212548600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr1:212504200-212525600	Weak transcription	Spleen	Spleen
30	chr1:212504400-212509000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:212504400-212537600	Weak transcription	Psoas Muscle	Psoas
32	chr1:212504600-212513800	Strong transcription	Liver	Liver
33	chr1:212504800-212507600	Weak transcription	Fetal Intestine Small	intestine
34	chr1:212504800-212525800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:212504800-212526000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr1:212505000-212525600	Weak transcription	Colonic Mucosa	Colon
37	chr1:212505200-212510200	Strong transcription	Primary B cells from cord blood	blood
38	chr1:212505200-212531400	Weak transcription	HMEC	breast
39	chr1:212505400-212509200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr1:212505400-212513400	Strong transcription	Fetal Thymus	thymus
41	chr1:212505600-212510800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr1:212505600-212513200	Strong transcription	Dnd41	blood
43	chr1:212505800-212508000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr1:212505800-212520200	Weak transcription	Colon Smooth Muscle	Colon
45	chr1:212505800-212533200	Weak transcription	NH-A	brain
46	chr1:212506000-212507600	Strong transcription	K562	blood
47	chr1:212506000-212514800	Strong transcription	Adipose Nuclei	Adipose
48	chr1:212506200-212507600	Strong transcription	Fetal Stomach	stomach
49	chr1:212506200-212509800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr1:212506200-212512400	Strong transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links