Variant report

Variant	rs73082777
Chromosome Location	chr3:52107671-52107672
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:52100511..52102649-chr3:52105549..52107890,2	K562	blood:
2	chr3:52085365..52087890-chr3:52105786..52108458,2	MCF-7	breast:
3	chr3:52107340..52110604-chr3:52139807..52142191,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs68104497	1.00[AMR][1000 genomes]
rs73082757	1.00[AMR][1000 genomes]
rs73082779	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520211	chr3:51772347-52166147	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv1804090	chr3:51962081-52140591	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv1835339	chr3:51962081-52140591	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv1003581	chr3:51973395-52108645	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv1001062	chr3:51973395-52134638	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv519445	chr3:52004317-52367932	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
7	nsv876786	chr3:52041566-52236762	Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv984541	chr3:52055970-52285682	Genic enhancers Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52092200-52107800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:52096000-52107800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:52097400-52110800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:52097600-52108200	Weak transcription	NHLF	lung
5	chr3:52097600-52119800	Weak transcription	GM12878-XiMat	blood
6	chr3:52100000-52108200	Weak transcription	Gastric	stomach
7	chr3:52101800-52110200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:52102000-52111200	Weak transcription	Fetal Kidney	kidney
9	chr3:52102600-52108200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:52102600-52121000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:52102800-52107800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:52103200-52108200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:52103200-52122000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr3:52103200-52124800	Weak transcription	Colonic Mucosa	Colon
15	chr3:52103400-52114600	Weak transcription	Fetal Intestine Large	intestine
16	chr3:52103600-52108000	Weak transcription	Fetal Intestine Small	intestine
17	chr3:52104200-52108400	Enhancers	Right Atrium	heart
18	chr3:52105200-52110400	Weak transcription	Aorta	Aorta
19	chr3:52105200-52110400	Weak transcription	Brain Substantia Nigra	brain
20	chr3:52105600-52107800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:52105600-52110400	Weak transcription	Fetal Lung	lung
22	chr3:52105600-52110800	Weak transcription	Colon Smooth Muscle	Colon
23	chr3:52105600-52111200	Weak transcription	Osteobl	bone
24	chr3:52105600-52119600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr3:52105600-52120800	Strong transcription	Dnd41	blood
26	chr3:52105600-52124000	Weak transcription	Pancreas	Pancrea
27	chr3:52105800-52108600	Weak transcription	Placenta	Placenta
28	chr3:52105800-52108600	Weak transcription	NHEK	skin
29	chr3:52105800-52110800	Weak transcription	NHDF-Ad	bronchial
30	chr3:52105800-52112000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:52105800-52119200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:52105800-52124000	Weak transcription	Hela-S3	cervix
33	chr3:52105800-52142400	Weak transcription	Primary B cells from cord blood	blood
34	chr3:52106000-52107800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:52106000-52108800	Weak transcription	Esophagus	oesophagus
36	chr3:52106000-52110200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr3:52106000-52110400	Weak transcription	Brain Germinal Matrix	brain
38	chr3:52106000-52110800	Weak transcription	Right Ventricle	heart
39	chr3:52106000-52111000	Weak transcription	Fetal Heart	heart
40	chr3:52106000-52111000	Weak transcription	Lung	lung
41	chr3:52106000-52111400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr3:52106200-52121000	Weak transcription	HSMM	muscle
43	chr3:52106400-52108000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:52106400-52108600	Weak transcription	Fetal Muscle Leg	muscle
45	chr3:52106400-52108800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr3:52106400-52110000	Strong transcription	Fetal Thymus	thymus
47	chr3:52106400-52110800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr3:52106400-52110800	Weak transcription	Left Ventricle	heart
49	chr3:52106400-52112000	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr3:52106400-52114400	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links