Variant report

Variant	rs7308402
Chromosome Location	chr12:117759447-117759448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10850808	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs11612772	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs12423054	0.81[EUR][1000 genomes]
rs1520811	0.87[CEU][hapmap]
rs2077171	0.89[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3782212	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4766843	0.92[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7295972	0.81[ASW][hapmap]
rs9658281	0.87[CEU][hapmap]
rs9658303	1.00[ASW][hapmap];0.83[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9658304	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7308402	OAS2	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117728000-117771200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:117739800-117771400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr12:117749400-117770800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:117757000-117761800	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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