Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11182326	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11182328	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11182332	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11182345	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11182348	0.88[CEU][hapmap]
rs11182353	0.88[CEU][hapmap]
rs11182354	0.88[CEU][hapmap]
rs11182355	0.88[CEU][hapmap]
rs11829881	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12301015	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12303804	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12309681	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12315094	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12318365	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12578394	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17093971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4238092	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs59709721	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73085705	0.93[ASN][1000 genomes]
rs7969641	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7971516	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44342000-44367200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:44343600-44359400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:44343600-44363400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:44343600-44376800	Weak transcription	Pancreas	Pancrea
5	chr12:44346000-44357800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:44346200-44363800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:44352000-44363400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr12:44353800-44358000	Weak transcription	Stomach Mucosa	stomach
9	chr12:44354400-44359000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr12:44354400-44367000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr12:44354600-44359000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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