Variant report

Variant	rs73085974
Chromosome Location	chr7:25637966-25637967
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73085994	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	esv2753823	chr7:25626156-25655093	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25635000-25638800	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:25636400-25640600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:25636400-25642200	Weak transcription	Fetal Intestine Small	intestine
4	chr7:25636400-25642600	Weak transcription	Fetal Intestine Large	intestine
5	chr7:25636600-25642600	Weak transcription	Fetal Stomach	stomach
6	chr7:25637000-25638800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:25637200-25638000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:25637200-25638000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr7:25637400-25638400	Weak transcription	Pancreas	Pancrea
10	chr7:25637400-25638600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr7:25637400-25642800	Weak transcription	Aorta	Aorta
12	chr7:25637600-25638000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:25637600-25638000	Enhancers	Adipose Nuclei	Adipose
14	chr7:25637600-25638400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:25637600-25638400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:25637600-25638600	Enhancers	Small Intestine	intestine
17	chr7:25637600-25638800	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links