Variant report

Variant	rs73087348
Chromosome Location	chr3:42811571-42811572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10470680	1.00[ASN][1000 genomes]
rs17074894	1.00[ASN][1000 genomes]
rs17238972	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1816227	1.00[ASN][1000 genomes]
rs28378297	1.00[ASN][1000 genomes]
rs28601753	1.00[ASN][1000 genomes]
rs3915020	1.00[ASN][1000 genomes]
rs551658	1.00[ASN][1000 genomes]
rs61004728	1.00[ASN][1000 genomes]
rs62248962	1.00[ASN][1000 genomes]
rs62249006	1.00[ASN][1000 genomes]
rs62249007	1.00[ASN][1000 genomes]
rs62249008	1.00[ASN][1000 genomes]
rs62249009	1.00[ASN][1000 genomes]
rs62249011	1.00[ASN][1000 genomes]
rs62249013	1.00[ASN][1000 genomes]
rs62249014	1.00[ASN][1000 genomes]
rs62249016	1.00[ASN][1000 genomes]
rs6763762	1.00[ASN][1000 genomes]
rs6773223	1.00[ASN][1000 genomes]
rs6775999	1.00[ASN][1000 genomes]
rs6798412	1.00[ASN][1000 genomes]
rs6865	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075297	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075301	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73077208	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73077214	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73077220	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73077238	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085343	1.00[ASN][1000 genomes]
rs735320	1.00[ASN][1000 genomes]
rs7617715	1.00[ASN][1000 genomes]
rs7641452	1.00[ASN][1000 genomes]
rs7644923	1.00[ASN][1000 genomes]
rs9311330	1.00[ASN][1000 genomes]
rs9311331	1.00[ASN][1000 genomes]
rs9808932	1.00[ASN][1000 genomes]
rs9833284	1.00[ASN][1000 genomes]
rs9837761	1.00[ASN][1000 genomes]
rs9852930	1.00[ASN][1000 genomes]
rs9858270	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013578	chr3:42747858-42817321	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv999713	chr3:42749022-42817321	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv1846968	chr3:42787469-42832979	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42795600-42814000	Weak transcription	Gastric	stomach
2	chr3:42795600-42814400	Weak transcription	Aorta	Aorta
3	chr3:42803000-42814200	Weak transcription	Right Atrium	heart
4	chr3:42804200-42814200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:42805000-42813800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:42807400-42813400	Weak transcription	Primary B cells from cord blood	blood
7	chr3:42807400-42814000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:42808000-42812400	Weak transcription	HepG2	liver
9	chr3:42808000-42814000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:42808000-42814200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:42808800-42813200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr3:42811000-42811600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:42811200-42814000	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links