Variant report

Variant	rs73088373
Chromosome Location	chr5:40992240-40992241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73090332	1.00[AMR][1000 genomes]
rs73092351	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881467	chr5:40869802-41008650	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757114	chr5:40874078-41009282	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759341	chr5:40874078-41009282	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv823055	chr5:40875708-41004839	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv35077	chr5:40875843-41000671	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv880339	chr5:40986084-41034181	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40988800-40992400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:40988800-40993400	Enhancers	HepG2	liver
3	chr5:40989000-40992600	Weak transcription	Lung	lung
4	chr5:40990200-40994800	Enhancers	Adipose Nuclei	Adipose
5	chr5:40990400-40992800	Enhancers	Fetal Intestine Large	intestine
6	chr5:40990400-40993200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr5:40990400-40993200	Enhancers	Fetal Intestine Small	intestine
8	chr5:40990400-40993200	Enhancers	Fetal Lung	lung
9	chr5:40990600-40992800	Enhancers	Colon Smooth Muscle	Colon
10	chr5:40990800-40992400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:40991000-40993000	Enhancers	Stomach Mucosa	stomach
12	chr5:40991000-40993400	Enhancers	Duodenum Mucosa	Duodenum
13	chr5:40991400-40992400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:40991400-40992400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr5:40991400-40992600	Weak transcription	Right Atrium	heart
16	chr5:40991400-40993600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:40991800-40992400	Enhancers	Gastric	stomach
18	chr5:40991800-40995400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:40992000-40992400	Enhancers	Brain Hippocampus Middle	brain
20	chr5:40992000-40993800	Enhancers	Ovary	ovary
21	chr5:40992200-40992400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:40992200-40992400	Enhancers	Fetal Kidney	kidney
23	chr5:40992200-40992400	Enhancers	Stomach Smooth Muscle	stomach
24	chr5:40992200-40993000	Flanking Active TSS	Liver	Liver
25	chr5:40992200-40993000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr5:40992200-40993200	Enhancers	Left Ventricle	heart
27	chr5:40992200-40993200	Enhancers	Pancreas	Pancrea

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