Variant report

Variant	rs73089761
Chromosome Location	chr12:44448324-44448325
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:44446827..44449468-chr12:44449634..44452541,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1532218	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17093973	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17093993	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17094007	1.00[EUR][1000 genomes]
rs17121301	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2407791	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55641600	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55657021	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55773976	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55834309	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55917469	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56011342	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56081380	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56114967	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56122564	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56227915	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56337317	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56355753	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7132451	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7136217	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7303909	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73085758	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73085764	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73085767	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73085788	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73087603	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73087605	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73087610	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73087626	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73087664	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73087687	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73087696	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73087702	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089730	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089734	1.00[EUR][1000 genomes]
rs73089739	0.98[EUR][1000 genomes]
rs73089744	0.98[EUR][1000 genomes]
rs73089748	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089752	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73089753	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73091736	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73091741	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73091745	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7311778	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7960478	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9783422	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9783507	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9919711	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9919742	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832391	chr12:44394137-44552555	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44438400-44449000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:44439200-44464400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:44445800-44448400	Enhancers	Hela-S3	cervix
4	chr12:44446800-44448400	Enhancers	NHEK	skin
5	chr12:44447000-44448400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:44447000-44459800	Weak transcription	Gastric	stomach
7	chr12:44447200-44448400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr12:44447200-44448400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:44447800-44448400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr12:44448000-44449000	Enhancers	Fetal Brain Male	brain
11	chr12:44448200-44452000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links